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berkeley_reactor_200306_biofilm_scaffold_16012

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Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_16012_1

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1..303
DNA (303bp) protein (101aa)
Reductase (Fragment) n=1 Tax=uncultured bacterium RepID=A4Q917_9BACT
FAD dependent oxidoreductase
Reductase {ECO:0000313|EMBL:CAM35569.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
berkeley_reactor_200306_biofilm_scaffold_16012_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

300..674
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037AEDE6
4Fe-4S ferredoxin {ECO:0000313|EMBL:EPE94342.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
4Fe-4S ferredoxin
berkeley_reactor_200306_biofilm_scaffold_16012_3
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

671..2065
DNA (1395bp) protein (465aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WSE9_9RHIZ
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EIZ83431.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
Pyridine nucleotide-disulfide oxidoreductase family protein
berkeley_reactor_200306_biofilm_scaffold_16012_4
bacterium YEK0313, Bacteria

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2222..2449
DNA (228bp) protein (76aa)
50S ribosomal protein L31 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000365D05E
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
50S ribosomal protein L31
berkeley_reactor_200306_biofilm_scaffold_16012_5
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2594..3076)
DNA (483bp) protein (161aa)
Mll3540 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98G07_RHILO
hypothetical protein
Mll3540 protein {ECO:0000313|EMBL:BAB50409.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_16012_6
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3182..3919)
DNA (738bp) protein (246aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EUB98681.1}; EC=1.1.1.30 {ECO:0000313|EMBL:EUB98681.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2ISD6_9RHIZ
2-keto-3-deoxy-L-fuconate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_16012_7
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4357..5682
DNA (1326bp) protein (442aa)
Putative oxidoreductase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYE1_9RHIZ
Homoserine dehydrogenase {ECO:0000313|EMBL:ESY00425.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
dihydrodipicolinate reductase
berkeley_reactor_200306_biofilm_scaffold_16012_8
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5780..7294
DNA (1515bp) protein (505aa)
Carbohydrate kinase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FUB1_9RHIZ
Carbohydrate kinase {ECO:0000313|EMBL:ESX83085.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
xylB; xylulose kinase
berkeley_reactor_200306_biofilm_scaffold_16012_9
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7552..8550)
DNA (999bp) protein (333aa)
UPI0003D01716 related cluster n=1 Tax=unknown RepID=UPI0003D01716
Uncharacterized protein {ECO:0000313|EMBL:ESZ19538.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_16012_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8751..9704
DNA (954bp) protein (318aa)
D-ribose transporter subunit membrane component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7S5_9RHIZ
D-ribose transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CCV12238.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
rbsCch4; ribose ABC transporter
berkeley_reactor_200306_biofilm_scaffold_16012_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9849..10787
DNA (939bp) protein (313aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CCV12237.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV12237.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4K2_9RHIZ
ribose ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_16012_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11125..12633
DNA (1509bp) protein (503aa)
UPI0003CE6515 related cluster n=1 Tax=unknown RepID=UPI0003CE6515
Sugar ABC transporter {ECO:0000313|EMBL:KGM32186.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter nucleotide binding/ATPase
berkeley_reactor_200306_biofilm_scaffold_16012_13
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12948..13709
DNA (762bp) protein (254aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) RepID=H8H0J6_DEIGI
Short chain dehydrogenase {ECO:0000313|EMBL:CDX15503.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
Oxidoreductase, short chain dehydrogenase/reductase family
berkeley_reactor_200306_biofilm_scaffold_16012_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13751..14533
DNA (783bp) protein (261aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:CCV08968.1}; EC=1.1.1.125 {ECO:0000313|EMBL:CCV08968.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative short-chain dehydrogenase/reductase (EC:1.-.-.-)
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EY82_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_16012_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14755..15525)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378041F
Short-chain dehydrogenase {ECO:0000313|EMBL:KGM30936.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_16012_16
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15522..16340)
DNA (819bp) protein (273aa)
Acetoacetate decarboxylase {ECO:0000313|EMBL:EYD77363.1}; EC=4.1.1.4 {ECO:0000313|EMBL:EYD77363.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative Acetoacetate decarboxylase (EC:4.1.1.4)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362DDB2
berkeley_reactor_200306_biofilm_scaffold_16012_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..17130)
DNA (798bp) protein (266aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003730702
Uncharacterized protein {ECO:0000313|EMBL:KKB11053.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
berkeley_reactor_200306_biofilm_scaffold_16012_18
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17127..17939)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036576B6
putative Xylose isomerase
Putative Xylose isomerase {ECO:0000313|EMBL:CCO57668.1}; TaxID=28173 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo.;"
berkeley_reactor_200306_biofilm_scaffold_16012_19

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comp(17936..18976)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367A52F
Putative oxidoreductase {ECO:0000313|EMBL:ACF98103.1}; TaxID=548897 species="Bacteria; environmental samples.;" source="uncultured bacterium 1042.;"
putative oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_16012_20
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18973..19689)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037CC37A
Uncharacterized protein {ECO:0000313|EMBL:EYD77370.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative Transcriptional regulator, GntR family
berkeley_reactor_200306_biofilm_scaffold_16012_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19954..21159)
DNA (1206bp) protein (402aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6BAA1_RHILS
periplasmic binding protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ACS60842.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_16012_22
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21381..22505
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003746CA7
Uncharacterized protein {ECO:0000313|EMBL:KKB11049.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Mandelate racemase
berkeley_reactor_200306_biofilm_scaffold_16012_23
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22598..23101
DNA (504bp) protein (168aa)
lytic transglycosylase n=1 Tax=Methylocystis rosea RepID=UPI0003828DC2
Lytic transglycosylase {ECO:0000313|EMBL:EXL07563.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
lytic transglycosylase
berkeley_reactor_200306_biofilm_scaffold_16012_24
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23123..24127)
DNA (1005bp) protein (335aa)
Transcriptional regulator, DeoR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDY9_SINMW
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABR61869.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_16012_25
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24255..25760
DNA (1506bp) protein (502aa)
Carbohydrate kinase FGGY n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UDY1_SINMW
carbohydrate kinase FGGY
Carbohydrate kinase FGGY {ECO:0000313|EMBL:ABR61861.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
berkeley_reactor_200306_biofilm_scaffold_16012_26
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25796..26812
DNA (1017bp) protein (339aa)
Dehydrogenase E1 component n=3 Tax=Ochrobactrum RepID=C4WQ71_9RHIZ
Dehydrogenase E1 component {ECO:0000313|EMBL:EEQ94414.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
dehydrogenase E1 component
berkeley_reactor_200306_biofilm_scaffold_16012_27
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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26821..27798
DNA (978bp) protein (326aa)
Transketolase central region n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3IZT7_9RHIZ
TPP-dependent acetoin dehydrogenase complex, E1 protein subunit beta {ECO:0000313|EMBL:KDB02346.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
transketolase central region
berkeley_reactor_200306_biofilm_scaffold_16012_28
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27795..29057
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X160_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDB02388.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
branched-chain alpha-keto acid dehydrogenase subunit E2
berkeley_reactor_200306_biofilm_scaffold_16012_29
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29114..30214
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000304B202
sugar ABC transporter periplasmic protein
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ERM02415.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
berkeley_reactor_200306_biofilm_scaffold_16012_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30287..31804
DNA (1518bp) protein (506aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZN6_9RHIZ
hypothetical protein
Displaying items 1-30 of 81 in total

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