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berkeley_reactor_200306_biofilm_scaffold_16012

Search features with annotation key words

Displaying items 61-81 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_16012_61
unknown

Not on your lists

comp(60629..60748)
DNA (120bp) protein (40aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_16012_62
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60748..60990)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DXC2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJC46675.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_16012_63
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61103..62071)
DNA (969bp) protein (323aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G8B3_9BURK
Alcohol dehydrogenase {ECO:0000313|EMBL:KJC56687.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
alcohol dehydrogenase zinc-binding domain protein
berkeley_reactor_200306_biofilm_scaffold_16012_64
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62155..63078
DNA (924bp) protein (308aa)
LysR family regulatory protein n=3 Tax=Burkholderia cenocepacia RepID=B4EDR1_BURCJ
LysR family transcriptional regulator {ECO:0000313|EMBL:KJC60858.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
LysR family regulatory protein
berkeley_reactor_200306_biofilm_scaffold_16012_65
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63155..63829
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AVB2_RHILS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDX40816.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
berkeley_reactor_200306_biofilm_scaffold_16012_66
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63868..64743)
DNA (876bp) protein (292aa)
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRT5_9GAMM
Oxidoreductase {ECO:0000313|EMBL:EIL89926.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_16012_67
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64840..65736
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034944D4
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AHL33461.1}; TaxID=930166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum.;"
berkeley_reactor_200306_biofilm_scaffold_16012_68
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(65763..66677)
DNA (915bp) protein (305aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNI7_AGRRK
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EJK87480.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_16012_69
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66813..67886
DNA (1074bp) protein (358aa)
Tartrate dehydrogenase n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JNI5_AGRRK
tartrate dehydrogenase
Tartrate dehydrogenase/decarboxylase TtuC {ECO:0000313|EMBL:GAJ92353.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
berkeley_reactor_200306_biofilm_scaffold_16012_70
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67902..69152)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QVK9_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF79186.1}; TaxID=1239307 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Sodalis.;" source="Sodalis praecaptivus.;"
berkeley_reactor_200306_biofilm_scaffold_16012_71
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69149..70288)
DNA (1140bp) protein (380aa)
epoxide hydrolase n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237DC1B
Epoxide hydrolase {ECO:0000313|EMBL:KIZ47285.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Epoxide hydrolase domain protein
berkeley_reactor_200306_biofilm_scaffold_16012_72
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70449..71366
DNA (918bp) protein (306aa)
Transcriptional regulator2C LysR family protein n=2 Tax=Pseudomonas RepID=J0PJD8_9PSED
LysR family transcriptional regulator {ECO:0000313|EMBL:KIZ47286.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_16012_73
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71514..72362)
DNA (849bp) protein (283aa)
Transcriptional regulator, XRE family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKT1_BEII9
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACB95120.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_16012_74
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72454..73347
DNA (894bp) protein (298aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKT0_BEII9
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACB95119.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_16012_75
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73442..75400
DNA (1959bp) protein (653aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00036F9410
Uncharacterized protein {ECO:0000313|EMBL:KHJ54043.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_16012_76
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75455..76003)
DNA (549bp) protein (183aa)
TetR family transcriptional regulator n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003476D58
TetR family transcriptional regulator {ECO:0000313|EMBL:EMS41007.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_16012_77
Hafnia alvei, Hafnia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76118..77335
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Enterobacteriaceae bacterium 9_2_54FAA RepID=E5YE26_9ENTR
Putative transport protein/putative regulator {ECO:0000313|EMBL:KFC88220.1}; TaxID=910996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Hafnia.;" source="Hafnia alvei ATCC 13337.;"
membrane protein
berkeley_reactor_200306_biofilm_scaffold_16012_78
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77466..78233
DNA (768bp) protein (256aa)
Putative transposase for insertion sequence element n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J5V2_ACIMA
putative transposase for insertion sequence element
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAJ82496.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
berkeley_reactor_200306_biofilm_scaffold_16012_79
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78544..78846
DNA (303bp) protein (101aa)
Putative transposase for insertion sequence NGRIS-20e n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MBS3_RHISN
transposase for insertion sequence NGRIS-20g
Putative transposase for insertion sequence NGRIS-20i {ECO:0000313|EMBL:ACP23483.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
berkeley_reactor_200306_biofilm_scaffold_16012_80
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79276..80010
DNA (735bp) protein (245aa)
Transposase, IS4 family n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07SU7_RHOP5
transposase, IS4
Transposase, IS4 family {ECO:0000313|EMBL:ABJ04987.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
berkeley_reactor_200306_biofilm_scaffold_16012_81
unknown

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comp(79836..80219)
DNA (384bp) protein (128aa)

This feature has no annotations

Displaying items 61-81 of 81 in total

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