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berkeley_reactor_200306_biofilm_scaffold_16012_67

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 64840..65736

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034944D4 similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 298.0
  • Bit_score: 498
  • Evalue 2.60e-138
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 78.9
  • Coverage: 298.0
  • Bit_score: 490
  • Evalue 3.40e-136
LysR family transcriptional regulator {ECO:0000313|EMBL:AHL33461.1}; TaxID=930166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.9
  • Coverage: 298.0
  • Bit_score: 490
  • Evalue 1.70e-135

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Taxonomy

Pseudomonas brassicacearum → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 897
ATGCCGGAAGACCTGCAGGATCTCTACGCCTTCCTGGCGGTGACGCGGGCCGGCGGCTTTCGCGAGGGCGCACGCGCCGGCCGCGTGTCGGCCTCGAGCCTCAGCGAGGCCGTGCGGCGCCTCGAAGCCCGGCTCGGCGTGCGCCTGCTCAACCGCACCACCCGCAGCGTTGCCCCGACCGAGGCGGGCGCCCGCCTGGTCGAGCGGCTGGGACCGGCCCTCGGCGAGGTCGAGGCGGCGCTCGACGTGGTCAACAGCTACCGCGACCGGCCGGCCGGGACGCTCCGGCTCAACGTGCCCGCCACCGCCGCCCGCCTGGTGCTGCCGCCGATCGTCACGCCCTTCCTCCGGACCTACCCCGACATCCGCCTGGAGGTGATGGTCGAGGACAGCTTCGTCGACGTGCTCGCTGCCGGCTGCGACGCCGGCATCCGCTATGACGAGCGGCTCGAGCAGGACATGGTCGCGGTGCCGATCGGCCCGCGCGTCCAGCGCTTCGCCACCGCCGCCTCCCCCGCCTATCTCGCCGAGAGGGGCCGGCCCGAGCACCCGCGCGATCTGCTCGCCCACGCCTGCCTGCGCGGGCAGTTCGCCAGCGGCACCATCCCGACCTGGGAGTTCGAGCGGGACGGCGAGATCGTCCGCGTCGACCCGAGCGGCCCGCTGCTGGTGCGCCTGGGCGCGGCGGTGGACCTGGCGGTGGCGGCCGCGGTGGAGGGGCTCGGCATCATCCACCTCTTCGAGGGCTGGCTGCAGCCCCATCTCGACAGCGGCACGCTCGAGCCGGTGCTGCAGCCCTGGTGGCAGAATTTCACTGGGCCGTTCCTCTATTATCCCGGCCGCCGCCACCTGCCCTCGCCGCTACGCGCCTTCGTCGATTTCATCCGCTCGCGCTGA
PROTEIN sequence
Length: 299
MPEDLQDLYAFLAVTRAGGFREGARAGRVSASSLSEAVRRLEARLGVRLLNRTTRSVAPTEAGARLVERLGPALGEVEAALDVVNSYRDRPAGTLRLNVPATAARLVLPPIVTPFLRTYPDIRLEVMVEDSFVDVLAAGCDAGIRYDERLEQDMVAVPIGPRVQRFATAASPAYLAERGRPEHPRDLLAHACLRGQFASGTIPTWEFERDGEIVRVDPSGPLLVRLGAAVDLAVAAAVEGLGIIHLFEGWLQPHLDSGTLEPVLQPWWQNFTGPFLYYPGRRHLPSPLRAFVDFIRSR*