ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_20018_23

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 16605..17552

Top 3 Functional Annotations

Value Algorithm Source
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVM0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 62.4
  • Coverage: 295.0
  • Bit_score: 382
  • Evalue 3.70e-103
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR83791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 295.0
  • Bit_score: 382
  • Evalue 5.20e-103
transcriptional regulator, LysR family similarity KEGG
DB: KEGG
  • Identity: 57.4
  • Coverage: 298.0
  • Bit_score: 342
  • Evalue 7.10e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 948
GTGCTCCGCAACCTGCCCCTCGCCACGCTGCGCACCTTCGAGGCCGCCGCCCGCCACCAGAGCCTGGCCAAGGCCGCCTTCGAGCTCAGCCTGACCGACAGCGCGGTGAGCCACCAGCTGCGCCGGCTGGAGGAGGCGCTCGGCGTCGCCCTGTTCGAGAAGGCGGGACGCGGCGTGGTCCTCACCGATGCCGGACGCGTCTTCGCCCGCTCGGTCGGCACCGCCCTGCGCGACATCGCCCGCACCGCCCACAGCCTCGCCGATGCCGGCGAGGTCGGCGGCCGGCTCACCATCGCCTGTCCGCCGATGTTTGCCGGCAAATGGCTCGCCAAGAACCTCGCCGGGTTCTGCACCGACCACCCCGGCATCGAATGCCATATCCGCCTTTTCGACAACGAGCGCGTGGCCGAGGCGGCGGATGCCGATCTCGGCATCCTGTTCGGCACCGGCTCCTGGCCGGGCAAATGGTCGGCGCTCCTGGAGATGGTCGCGATCGCGCCCGCCTGCAGCCCGTTGCTGTTCCAGCGGGCCGGGCGCACCCTGACCCGGCCTTCCGACCTCACCGACGTGATCCTGCTGCACCAGGACGACGGCACCGAGTGGCGGCGCTGGCTCGCCGCGGAGGGCGAGCACGTCTTCGAGCGCTATCGCCGCCACCTCTATTGCAGCGACCTCGGCATCGCCATCGACCTCGCCGCCGAGGGCGTCGGCATGGTGCTGGTCAGCGACACGCTCGCAGCTTCCTATATCGGCGAAGGCACGCTGCTGCGTCCCTTCGCGGCCACCATCCAGGCGACCGGCGGCTGGTACGTCCTGTGCGACGGCTACCGGCTCGAGCGCTCCGCCGTCCGGCTGTTCCTGCACTGGCTGCTCGGCCGCTTCGGCCAGATGCTGAGCCTGACGCCCACGGCTCAGGCCGGCGAGGACGGCCTGCTCGACAGCCCGTAG
PROTEIN sequence
Length: 316
VLRNLPLATLRTFEAAARHQSLAKAAFELSLTDSAVSHQLRRLEEALGVALFEKAGRGVVLTDAGRVFARSVGTALRDIARTAHSLADAGEVGGRLTIACPPMFAGKWLAKNLAGFCTDHPGIECHIRLFDNERVAEAADADLGILFGTGSWPGKWSALLEMVAIAPACSPLLFQRAGRTLTRPSDLTDVILLHQDDGTEWRRWLAAEGEHVFERYRRHLYCSDLGIAIDLAAEGVGMVLVSDTLAASYIGEGTLLRPFAATIQATGGWYVLCDGYRLERSAVRLFLHWLLGRFGQMLSLTPTAQAGEDGLLDSP*