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berkeley_reactor_200306_biofilm_scaffold_20018

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Displaying items 1-30 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_20018_1
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..250
DNA (249bp) protein (83aa)
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter gallaeciensis DSM 26640.;"
UPI0003D6B823 related cluster n=1 Tax=unknown RepID=UPI0003D6B823
berkeley_reactor_200306_biofilm_scaffold_20018_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(295..564)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG26_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66969.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_20018_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

773..1684
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PPT8_9RHOB
PPK2 family polyphosphate:nucleotide phosphotransferase {ECO:0000313|EMBL:KFC66581.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polyphosphate-dependent ADP kinase
berkeley_reactor_200306_biofilm_scaffold_20018_4
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1827..3683
DNA (1857bp) protein (619aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003652AF1
Diguanylate cyclase {ECO:0000313|EMBL:KHL25883.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
GAF sensor-containing diguanylate cyclase/phosphodiesterase
berkeley_reactor_200306_biofilm_scaffold_20018_5
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3785..4180
DNA (396bp) protein (132aa)
Putative response regulator receiver (CheY-like protein) n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESZ0_BRASB
response regulator receiver
Putative response regulator receiver (CheY-like protein) {ECO:0000313|EMBL:ABQ39284.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_20018_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4177..4560
DNA (384bp) protein (128aa)
Putative response regulator receiver domain protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESZ1_BRASB
response regulator
Putative response regulator receiver domain protein {ECO:0000313|EMBL:ABQ39285.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_20018_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4576..5490)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator (EC:4.2.1.1)
LysR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HWF9_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM32862.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_20018_8
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5596..6438
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BLY2_9RHIZ
Short-chain dehydrogenase {ECO:0000313|EMBL:KJR61858.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_20018_9
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6487..7317)
DNA (831bp) protein (277aa)
UPI0003D0448D related cluster n=1 Tax=unknown RepID=UPI0003D0448D
Chloroperoxidase {ECO:0000313|EMBL:ESZ19628.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Non-heme chloroperoxidase
berkeley_reactor_200306_biofilm_scaffold_20018_10
unknown

Not on your lists

7666..7863
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7918..9318)
DNA (1401bp) protein (467aa)
MmgE/PrpD family protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P041_AZOS1
mmgE/PrpD family protein
MmgE/PrpD family protein {ECO:0000313|EMBL:BAI74020.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_20018_12
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9320..10090)
DNA (771bp) protein (257aa)
Polar amino acid transport system ATP-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P039_AZOS1
polar amino acid transport system ATP-binding protein
Polar amino acid transport system ATP-binding protein {ECO:0000313|EMBL:BAI74018.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_20018_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10092..10757)
DNA (666bp) protein (222aa)
ABC transporter permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P038_AZOS1
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAI74017.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_20018_14
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10761..11429)
DNA (669bp) protein (223aa)
ABC transporter permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P037_AZOS1
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAI74016.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_20018_15
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11468..12334)
DNA (867bp) protein (289aa)
ABC transporter substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P036_AZOS1
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAI74015.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
berkeley_reactor_200306_biofilm_scaffold_20018_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12608..12904)
DNA (297bp) protein (99aa)
Helix-turn-helix domain-containing protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G7A4_RHIML
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EHK74819.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
helix-turn-helix domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_20018_17
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12901..13092)
DNA (192bp) protein (64aa)
RelE-like cytotoxic translational repressor of toxin-antitoxin stability system n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G7A3_RHIML
RelE-like cytotoxic translational repressor of toxin-antitoxin stability system {ECO:0000313|EMBL:EHK74818.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
relE; RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
berkeley_reactor_200306_biofilm_scaffold_20018_18
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13050..13256)
DNA (207bp) protein (69aa)
RelE-like cytotoxic translational repressor of toxin-antitoxin stability system n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WQC4_VEREI
RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
RelE-like cytotoxic translational repressor of toxin-antitoxin stability system {ECO:0000313|EMBL:ABM59831.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
berkeley_reactor_200306_biofilm_scaffold_20018_19
unknown

Not on your lists

comp(13420..13935)
DNA (516bp) protein (172aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13969..14394)
DNA (426bp) protein (142aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W5H5_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KFC63278.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative AsnC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_20018_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14519..15568
DNA (1050bp) protein (350aa)
Putative ornithine cyclodeaminase, mu-crystallin n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I3B0_9BRAD
Putative ornithine cyclodeaminase, mu-crystallin {ECO:0000313|EMBL:KFC63279.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ocd1; ornithine cyclodeaminase
berkeley_reactor_200306_biofilm_scaffold_20018_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15570..16511
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037A5CFF
Uncharacterized protein {ECO:0000313|EMBL:KFC63280.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amidinotransferase
berkeley_reactor_200306_biofilm_scaffold_20018_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16605..17552
DNA (948bp) protein (316aa)
Glycine cleavage system transcriptional activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVM0_9RHIZ
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:EYR83791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, LysR family
berkeley_reactor_200306_biofilm_scaffold_20018_24
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17516..18496)
DNA (981bp) protein (327aa)
Agmatinase (EC:3.5.3.11)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036720B7
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67473.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
berkeley_reactor_200306_biofilm_scaffold_20018_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18907..19677
DNA (771bp) protein (257aa)
Histidine transport ATP-binding protein HisP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZA7_9RHIZ
Histidine transport ATP-binding protein HisP {ECO:0000313|EMBL:EYR83792.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisP; amino acid ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_20018_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19764..20540
DNA (777bp) protein (259aa)
Lysine-arginine-ornithine-binding periplasmic protein ArgT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ81_9RHIZ
Lysine-arginine-ornithine-binding periplasmic protein ArgT {ECO:0000313|EMBL:EYR83793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC-type amino acid transporter, periplasmic binding protein
berkeley_reactor_200306_biofilm_scaffold_20018_27
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20544..21233
DNA (690bp) protein (230aa)
ABC-type amino acid transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Z107_PARAH
ABC-type amino acid transport system, permease component
ABC-type amino acid transport system, permease component {ECO:0000313|EMBL:AGT11106.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
berkeley_reactor_200306_biofilm_scaffold_20018_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21230..21910
DNA (681bp) protein (227aa)
Nopaline transport system permease protein NocM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG32_9RHIZ
Amine acid ABC transporter, permease protein His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EYR83795.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
polar amino acid ABC transporter, inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_20018_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21902..23188)
DNA (1287bp) protein (429aa)
N-carbamoyl-L-amino acid hydrolase {ECO:0000313|EMBL:AHK05030.1}; EC=3.5.1.87 {ECO:0000313|EMBL:AHK05030.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
Amidase, hydantoinase/carbamoylase family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11F95_MESSB
allantoate amidohydrolase
berkeley_reactor_200306_biofilm_scaffold_20018_30
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23192..23761)
DNA (570bp) protein (190aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002D32D72
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
Displaying items 1-30 of 148 in total

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