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berkeley_reactor_200306_biofilm_scaffold_20018

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Displaying items 121-148 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_20018_121
unknown

Not on your lists

112463..113572
DNA (1110bp) protein (370aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_122
Desulfovibrio aespoeensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113569..114894)
DNA (1326bp) protein (442aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VVH7_DESAO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU63535.1}; TaxID=643562 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2).;"
berkeley_reactor_200306_biofilm_scaffold_20018_123
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114990..115577)
DNA (588bp) protein (196aa)
TetR family transcriptional regulator n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZYL6_9BRAD
TetR family transcriptional regulator {ECO:0000313|EMBL:KJC42842.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_20018_124
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115720..116151
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XBW4_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU49640.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
berkeley_reactor_200306_biofilm_scaffold_20018_125
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116169..116663
DNA (495bp) protein (165aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LNM8_RHITR
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:AGB71704.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_20018_126
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116808..117656)
DNA (849bp) protein (283aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P6_AGRVS
moaD; ABC transporter ATPase
ABC transporter nucleotide binding/ATPase protein {ECO:0000313|EMBL:ACM38444.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_127
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117649..118638)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI000372273B
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJB95686.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
peptide ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_20018_128
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118639..119493)
DNA (855bp) protein (285aa)
ABC transporter membrane spanning protein (Dipeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P4_AGRVS
dppC; peptide ABC transporter permease
ABC transporter membrane spanning protein (Dipeptide) {ECO:0000313|EMBL:ACM38442.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_129
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119490..120413)
DNA (924bp) protein (308aa)
ABC transporter membrane spanning protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P3_AGRVS
peptide ABC transporter permease
ABC transporter membrane spanning protein (Oligopeptide) {ECO:0000313|EMBL:ACM38441.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_130
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120886..122424)
DNA (1539bp) protein (513aa)
ABC transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P2_AGRVS
ABC transporter
ABC transporter {ECO:0000313|EMBL:ACM38440.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_131
unknown

Not on your lists

comp(122514..122684)
DNA (171bp) protein (57aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_132
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122684..124177)
DNA (1494bp) protein (498aa)
Glutamyl-tRNA amidotransferase subunit A n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P1_AGRVS
gatA; glutamyl-tRNA amidotransferase subunit A
Glutamyl-tRNA amidotransferase subunit A {ECO:0000313|EMBL:ACM38439.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_133
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124247..126787
DNA (2541bp) protein (847aa)
Two component response regulator n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0P0_AGRVS
two component response regulator
Two component response regulator {ECO:0000313|EMBL:ACM38438.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_20018_134
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127034..129295)
DNA (2262bp) protein (754aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036627EE
Uncharacterized protein {ECO:0000313|EMBL:KJC62207.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_20018_135
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129309..129629)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CFE71
Uncharacterized protein {ECO:0000313|EMBL:KJC62206.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_20018_136
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129667..130440)
DNA (774bp) protein (258aa)
3-oxoacyl-ACP reductase n=1 Tax=Meiothermus timidus RepID=UPI0003608EB5
Uncharacterized protein {ECO:0000313|EMBL:KJC48693.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_20018_137
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(130455..131111)
DNA (657bp) protein (219aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAY2_STAND
HAD superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ADH90999.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_138
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131108..132619)
DNA (1512bp) protein (504aa)
Carbohydrate kinase, FGGY-like protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAY1_STAND
carbohydrate kinase
Carbohydrate kinase, FGGY-like protein {ECO:0000313|EMBL:ADH90998.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_139
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132621..133421)
DNA (801bp) protein (267aa)
UPI0003CFFF71 related cluster n=1 Tax=unknown RepID=UPI0003CFFF71
SgcQ protein {ECO:0000313|EMBL:KJC62204.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
photosystem I assembly BtpA
berkeley_reactor_200306_biofilm_scaffold_20018_140
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(133457..134284)
DNA (828bp) protein (276aa)
Transcriptional regulator, DeoR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAX9_STAND
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ADH90996.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_141
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134449..135252
DNA (804bp) protein (268aa)
Estradiol 17-beta-dehydrogenase 8 {ECO:0000313|EMBL:EEX15472.1}; EC=1.1.1.62 {ECO:0000313|EMBL:EEX15472.1};; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
Estradiol 17-beta-dehydrogenase 8 n=1 Tax=Citreicella sp. SE45 RepID=D0D8C6_9RHOB
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_20018_142
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135957..136847
DNA (891bp) protein (297aa)
Mlr4706 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98DH2_RHILO
hypothetical protein
Mlr4706 protein {ECO:0000313|EMBL:BAB51299.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_20018_143
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136805..137557)
DNA (753bp) protein (251aa)
UPI0003CF2446 related cluster n=1 Tax=unknown RepID=UPI0003CF2446
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF82288.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_20018_144
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137716..139716)
DNA (2001bp) protein (667aa)
Peptidase S15 n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HF42_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EYD76676.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
peptidase S15
berkeley_reactor_200306_biofilm_scaffold_20018_145
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139788..141416)
DNA (1629bp) protein (543aa)
ABC transporter n=1 Tax=Rahnella aquatilis HX2 RepID=H8NQ42_RAHAQ
ABC transporter {ECO:0000313|EMBL:KFL32857.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_20018_146
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141424..142257)
DNA (834bp) protein (278aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) RepID=H2IUP1_RAHAC
Membrane component of an ABC superfamily sugar transporter {ECO:0000313|EMBL:KFC83296.1}; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
dipeptide/oligopeptide/nickel ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_20018_147
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(142266..143198)
DNA (933bp) protein (311aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) RepID=H2IUP2_RAHAC
dipeptide/oligopeptide/nickel ABC transporter permease
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AEX51685.1}; TaxID=745277 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnella.;" source="Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC; 105701 / NCIMB 13365 / CIP 78.65).;"
berkeley_reactor_200306_biofilm_scaffold_20018_148
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143384..144967)
DNA (1584bp) protein (528aa)
ABC transporter substrate-binding protein n=1 Tax=Erwinia toletana RepID=UPI00034DCC5A
extracellular solute-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABM56197.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
Displaying items 121-148 of 148 in total

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