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berkeley_reactor_200306_biofilm_scaffold_20018

Search features with annotation key words

Displaying items 61-90 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_20018_61
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53266..54537)
DNA (1272bp) protein (424aa)
amidase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:ADH87508.1}; EC=3.5.1.87 {ECO:0000313|EMBL:ADH87508.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Amidase, hydantoinase/carbamoylase family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0Z8_STAND
berkeley_reactor_200306_biofilm_scaffold_20018_62
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54534..55514)
DNA (981bp) protein (327aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0Z9_STAND
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein {ECO:0000313|EMBL:ADH87509.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_63
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55528..56319)
DNA (792bp) protein (264aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A100_STAND
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADH87510.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_64
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56321..57256)
DNA (936bp) protein (312aa)
Dihydrodipicolinate synthetase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A101_STAND
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ADH87511.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_65
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57265..57939)
DNA (675bp) protein (225aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A102_STAND
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH87512.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_66
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58018..58806)
DNA (789bp) protein (263aa)
Extracellular solute-binding protein family 3 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A103_STAND
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADH87513.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_67
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58866..59819)
DNA (954bp) protein (318aa)
Agmatinase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A104_STAND
agmatinase
Agmatinase {ECO:0000313|EMBL:ADH87514.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_68
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59837..60499)
DNA (663bp) protein (221aa)
ABC-type amino acid transport system, permease component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XMN2_PARAH
ABC-type amino acid transport system, permease component
ABC-type amino acid transport system, permease component {ECO:0000313|EMBL:AGT08534.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
berkeley_reactor_200306_biofilm_scaffold_20018_69
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60496..61317)
DNA (822bp) protein (274aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A106_STAND
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADH87516.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_70
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61314..62000)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A107_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87517.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_71
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62176..62919
DNA (744bp) protein (248aa)
Allophanate hydrolase subunit 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A108_STAND
allophanate hydrolase subunit 1
Allophanate hydrolase subunit 1 {ECO:0000313|EMBL:ADH87518.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_72
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62912..63952
DNA (1041bp) protein (347aa)
urea amidolyase-like protein (EC:6.3.4.6)
Urea amidolyase related protein {ECO:0000313|EMBL:ADH87519.1}; EC=6.3.4.6 {ECO:0000313|EMBL:ADH87519.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Urea amidolyase related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A109_STAND
berkeley_reactor_200306_biofilm_scaffold_20018_73
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64212..64982
DNA (771bp) protein (257aa)
UPF0271 protein Snov_0184 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A110_STAND
LamB/YcsF family protein
UPF0271 protein Snov_0184 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_20018_74
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65004..65312)
DNA (309bp) protein (103aa)
plasmid maintenance system antidote protein n=1 Tax=Rhizobium loti RepID=UPI00036628B7
Plasmid maintenance system antidote protein {ECO:0000313|EMBL:ESZ23554.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_20018_75
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65322..65618)
DNA (297bp) protein (99aa)
plasmid maintenance system killer protein n=1 Tax=Rhizobium giardinii RepID=UPI00037B2094
plasmid maintenance system killer protein
Plasmid maintenance system killer {ECO:0000313|EMBL:ACS55132.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_20018_76
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65831..67504)
DNA (1674bp) protein (558aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KUR2_METC4
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACK84291.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
berkeley_reactor_200306_biofilm_scaffold_20018_77
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67570..68502)
DNA (933bp) protein (311aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JB94_AGRRK
transcriptional regulator
Transcriptional regulator protein {ECO:0000313|EMBL:ACM25800.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
berkeley_reactor_200306_biofilm_scaffold_20018_78
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68674..70218
DNA (1545bp) protein (515aa)
Sugar phosphate permease n=1 Tax=Rhizobium sp. AP16 RepID=J2D1M3_9RHIZ
MFS transporter {ECO:0000313|EMBL:KEA07697.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Major facilitator superfamily drug efflux transporter
berkeley_reactor_200306_biofilm_scaffold_20018_79
unknown

Not on your lists

70566..70889
DNA (324bp) protein (108aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_80
unknown

Not on your lists

70891..72972
DNA (2082bp) protein (694aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_20018_81
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73081..73683)
DNA (603bp) protein (201aa)
ACP phosphodiesterase (EC:3.1.4.14)
FMN-dependent NADH-azoreductase 2 {ECO:0000255|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000255|HAMAP-Rule:MF_01216};; Azo-dye reductase 2 {ECO:0000255|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase 2 {ECO:0000255|HAMAP-Rule:MF_01216}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
FMN-dependent NADH-azoreductase 2 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=AZOR2_CUPPJ
berkeley_reactor_200306_biofilm_scaffold_20018_82
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(73683..74153)
DNA (471bp) protein (157aa)
GCN5-related N-acetyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV11_9BACT
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EDY22399.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
histone acetyltransferase HPA2-like acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_20018_83
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74150..74632)
DNA (483bp) protein (161aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
YnjA n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZP54_ACICS
YnjA
berkeley_reactor_200306_biofilm_scaffold_20018_84
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74699..75178
DNA (480bp) protein (160aa)
Transcriptional regulator, MarR family n=2 Tax=Ralstonia RepID=E2STM7_9RALS
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:AJW47009.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
berkeley_reactor_200306_biofilm_scaffold_20018_85
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75189..75698)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036A6707
Uncharacterized protein {ECO:0000313|EMBL:EJZ29134.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_20018_86
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75958..76527
DNA (570bp) protein (190aa)
Cytochrome B561 n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QBB4_RHOPT
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:ACE99067.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_20018_87
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76603..77454
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1V3_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM87123.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
berkeley_reactor_200306_biofilm_scaffold_20018_88
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77518..79695)
DNA (2178bp) protein (726aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUU3_9BURK
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein {ECO:0000313|EMBL:EHR69653.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
berkeley_reactor_200306_biofilm_scaffold_20018_89
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79701..80156)
DNA (456bp) protein (152aa)
Wenxma_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70063.1}; EC=1.3.99.16 {ECO:0000313|EMBL:KIQ70063.1};; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI0003637479
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
berkeley_reactor_200306_biofilm_scaffold_20018_90
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

80393..80941
DNA (549bp) protein (183aa)
Calcineurin-like phosphoesterase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZV6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KIJ70867.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
metallophosphoesterase
Displaying items 61-90 of 148 in total

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