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berkeley_reactor_200306_biofilm_scaffold_20018_26

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 19764..20540

Top 3 Functional Annotations

Value Algorithm Source
Lysine-arginine-ornithine-binding periplasmic protein ArgT n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ81_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 69.1
  • Coverage: 256.0
  • Bit_score: 360
  • Evalue 9.50e-97
Lysine-arginine-ornithine-binding periplasmic protein ArgT {ECO:0000313|EMBL:EYR83793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.1
  • Coverage: 256.0
  • Bit_score: 360
  • Evalue 1.30e-96
ABC-type amino acid transporter, periplasmic binding protein similarity KEGG
DB: KEGG
  • Identity: 70.4
  • Coverage: 250.0
  • Bit_score: 357
  • Evalue 1.80e-96

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 777
ATGAAGCCGTCCTTCCGCCTGCTCGGCGCCGCGCTGTTCGTCGCCGCCGCCTTCGGCGCGTCGCCTGCCGCTGCCGCCGGCGACACCGTGACCATCGCCACCGACGCCACCTTCCCGCCCTTCGAATCCGTCGACAGCAGCGGCAAGGTCGTCGGCTACGACGTCGAGCTGATGCAGGCGGTGTGCGAGGCCGCCGCGCTCAAGTGCAACATCATCAACGCCGCCTGGGAGGGCATGATCCCCGGCCTGATCAGCGGCAAGTACGACGCCCTGATCTCCCAGCTCACCGTCACCGAGGCCCGCCGCAAGGTCCTCGCCTTCAGCGACATCTACGACCACCCGGTGTTCCGCTTCGTGGCGAAGAAGGGCGCGGCCTACGAGTTCACGCCCGAGGGGCTGAAGGGCAAGACCATCGCCGTGCAGACCGGCACGCCGATGGACGCCTTCGTCACCAAGACCTTCCCGGGCGCCGACATCAAGCGCTACACCAGCGGGAGCGCCCCCTATCTCGAGCTCGCCTCCGGGCGCGCCGAGCTGCACATGAGCTACGAGGCGCAGATCACCCACGCCTTCCTCAAGAGCGAGGACGGCAAGGACTTCGCGCTGGTCGGCCCGCGCTACACCGGCAAGGACGCGCCGGAGTTCGGCGAGGGCGTCGCCATCGCCATCAACAAGCGCAACGCCGCGCTCCTGAAGGCGGTCAACGCCGGCCTCGCCAAGCTGCGCGAGAACGGCGCGATCGCCGCCCTCAACGCCAAATATTTCGGCGCCGAGTAA
PROTEIN sequence
Length: 259
MKPSFRLLGAALFVAAAFGASPAAAAGDTVTIATDATFPPFESVDSSGKVVGYDVELMQAVCEAAALKCNIINAAWEGMIPGLISGKYDALISQLTVTEARRKVLAFSDIYDHPVFRFVAKKGAAYEFTPEGLKGKTIAVQTGTPMDAFVTKTFPGADIKRYTSGSAPYLELASGRAELHMSYEAQITHAFLKSEDGKDFALVGPRYTGKDAPEFGEGVAIAINKRNAALLKAVNAGLAKLRENGAIAALNAKYFGAE*