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berkeley_reactor_200306_biofilm_scaffold_24940_21

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(20115..20906)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037379CC similarity UNIREF
DB: UNIREF100
  • Identity: 82.2
  • Coverage: 202.0
  • Bit_score: 334
  • Evalue 5.70e-89
XRE family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 81.0
  • Coverage: 205.0
  • Bit_score: 333
  • Evalue 3.60e-89
XRE family transcriptional regulator {ECO:0000313|EMBL:AHB48854.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.0
  • Coverage: 205.0
  • Bit_score: 333
  • Evalue 1.80e-88

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Taxonomy

Hyphomicrobium nitrativorans → Hyphomicrobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 792
ATGAGCAAGCGGGCGGAAGCGGGATCGGGACCGAGGGCGCCGGAGGCCTCCGGCAGCGAGCTGCTCCGCCCGGTGCCGCGCCGCGCTCCGATCGCCGCCAACGAGGCGATCCCGAGCGAGACGCAGTTCCCCGACGCCTTCCCCACCGGGAACTATCCGGCCGCGCCGGCCATGCCCTCGCAGGACCCGCACGCGCTGGAAGGGGCGCGCGACAATATCCTGGAAGTGGCGATCGGGCGCGAGGTGCGCGCCTTCCGCAACAAGCTCGGGATCACCGTCTCCGACCTCGCCGCGGCGACGGGCCTGTCGCTCGGCATGCTGTCGAAGATCGAGAACGGCGTCACCTCGCCCTCGCTCACCACGCTGCAGTCGCTGTCGCGGGCGCTCGGCGTGCCGGTGACCGCCTTCTTCCGCCGCTACGAGGAGCGGCGCGACGCGGTGTTCGTCAAGGCGGGCGAGGGGCTGGCGATCGAGCGGCGCGGCACGCGGGCCAAGCACCAGTACCATCTGCTCGGCCATACCGGCGGCCACAGCGGCCGGGTGGTGGTCGAGCCCTACATGATCACCCTGACCGAGGAATCCGACGTCTTCCCGCTGTTCCAGCATTCCGGCCTGGAGTTCCTCTACATGCTGGAAGGCGAGGTGATGTACCGCCACGCCGACAAGCTCTACATCATGCAGCCGGGCGACAGCCTGTTCTTCGACGCCGATGCGCCGCACGGCCCGGAGGAGATGCGGAAATTGCCGATCCGCTTCCTCTCGATCATCTCCTATCCCCGCGACGACGCCTGA
PROTEIN sequence
Length: 264
MSKRAEAGSGPRAPEASGSELLRPVPRRAPIAANEAIPSETQFPDAFPTGNYPAAPAMPSQDPHALEGARDNILEVAIGREVRAFRNKLGITVSDLAAATGLSLGMLSKIENGVTSPSLTTLQSLSRALGVPVTAFFRRYEERRDAVFVKAGEGLAIERRGTRAKHQYHLLGHTGGHSGRVVVEPYMITLTEESDVFPLFQHSGLEFLYMLEGEVMYRHADKLYIMQPGDSLFFDADAPHGPEEMRKLPIRFLSIISYPRDDA*