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berkeley_reactor_200306_biofilm_scaffold_34479_4

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 4308..5171

Top 3 Functional Annotations

Value Algorithm Source
dapF; diaminopimelate epimerase (EC:5.1.1.7) similarity KEGG
DB: KEGG
  • Identity: 67.9
  • Coverage: 290.0
  • Bit_score: 402
  • Evalue 9.00e-110
Diaminopimelate epimerase {ECO:0000255|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000255|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00197};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.9
  • Coverage: 290.0
  • Bit_score: 402
  • Evalue 4.50e-109
Diaminopimelate epimerase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=DAPF_BRASO similarity UNIREF
DB: UNIREF100
  • Identity: 67.9
  • Coverage: 290.0
  • Bit_score: 402
  • Evalue 3.20e-109

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Taxonomy

Bradyrhizobium sp. ORS 278 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 864
ATGTCTCCGCTGTCCCACCGCCCCTACGCCAAGATGAACGGCATCGGCAACGAGATCGTCGTGCTTGACCTGCGCGACCTCGCCCATGCCGTCACACCGGCCGAGGCGCGGGCCATCGCGGCGCGCGAGCCCTTCGACCAGCTGATGGTGGTGCAGGCGCCGCGCACGGCGGGCACCGATGCCTTCATGCGCATCTACAACACCGACGGCAGCGAATCCGGGGCCTGCGGCAACGGCACCCGCTGCGTCGCCGCGCAGCTGATGCCCGCCCTCCGCACCGATCGGCTGACCCTGGAGACGCCGACCAGCCTGGTCGTCGCACGGCGGCAGGGCGAGCTCTTCACCGTCGACATGGGCCGGCCGCGCTTTGCCTGGAACGAGATCCCGCTGGCCGAGGCGTTCCCGGACACCCGCTATATCGAGCTGCAGATCGGCCCGATCGACGCGCCGGTGCTGCATTCGCCCTCCGCGGTCAGCATGGGCAACCCGCATGCCGTGTTCTGGGTCGACCGCGACCCCGCGACCTTCGATCTCGGCCGCATCGGCCCGCTCTTGGAGAACCACCCGATCTTCCCCGAGCGCGCCAACATCTCGTTGGCGCAGGTGCTCGATCCCGGCCATGTGCGCGTCCGCGTCTGGGAGCGCGGCGCCGGCCTGACCCGGGCCTGCGGCTCGGCTGCCTGCGCCGTCGCGGTGGCGGCGGCCCGCCTCAAGCGGACCGGCCGGACGGTGCGCATCACCCTGCCCGGCGGCGACCTGACGATCGACTGGCGCGAGCGCGACGACCATGTGCTGATGACCGGCGCGGTCGAGCTCGAGCATCACGGCACGCTCGATCCCGCCTGGTTCGCCGACGCCGCCTGA
PROTEIN sequence
Length: 288
MSPLSHRPYAKMNGIGNEIVVLDLRDLAHAVTPAEARAIAAREPFDQLMVVQAPRTAGTDAFMRIYNTDGSESGACGNGTRCVAAQLMPALRTDRLTLETPTSLVVARRQGELFTVDMGRPRFAWNEIPLAEAFPDTRYIELQIGPIDAPVLHSPSAVSMGNPHAVFWVDRDPATFDLGRIGPLLENHPIFPERANISLAQVLDPGHVRVRVWERGAGLTRACGSAACAVAVAAARLKRTGRTVRITLPGGDLTIDWRERDDHVLMTGAVELEHHGTLDPAWFADAA*