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berkeley_reactor_200306_biofilm_scaffold_34479

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Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_34479_1
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

1..1884
DNA (1884bp) protein (628aa)
Putative esterase n=4 Tax=Clostridium thermocellum RepID=D1NRJ8_CLOTM
Hedgehog/intein hint domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:ABU57811.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
berkeley_reactor_200306_biofilm_scaffold_34479_2
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1894..2241
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Ponticaulis koreensis RepID=UPI0003B2E8E2
Uncharacterized protein {ECO:0000313|EMBL:KCZ52926.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
berkeley_reactor_200306_biofilm_scaffold_34479_3
unknown

Not on your lists

comp(3514..3750)
DNA (237bp) protein (79aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_34479_4
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4308..5171
DNA (864bp) protein (288aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000255|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000255|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00197};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Diaminopimelate epimerase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=DAPF_BRASO
berkeley_reactor_200306_biofilm_scaffold_34479_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5173..6456
DNA (1284bp) protein (428aa)
2-methylthioadenine synthase n=1 Tax=Xanthobacteraceae RepID=UPI00036B141B
hypothetical protein
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:ADH90630.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_34479_6
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6566..7402
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037A1BFA
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ48002.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7882..8700)
DNA (819bp) protein (273aa)
Exodeoxyribonuclease III n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9C3_STAND
exodeoxyribonuclease III
Exodeoxyribonuclease III {ECO:0000313|EMBL:ADH90685.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_34479_8
bacterium YEK0313, Bacteria

Not on your lists

comp(8709..9587)
DNA (879bp) protein (293aa)
chromosome partitioning protein ParB n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037F8189
Chromosome-partitioning protein ParB {ECO:0000313|EMBL:CEJ16227.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
parB-like partition protein
berkeley_reactor_200306_biofilm_scaffold_34479_9
bacterium YEK0313, Bacteria

Not on your lists

comp(9605..10402)
DNA (798bp) protein (266aa)
chromosome partitioning protein ParA n=1 Tax=Methylopila sp. M107 RepID=UPI00035D7653
Chromosome partitioning protein ParA {ECO:0000313|EMBL:CEJ16226.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
cobyrinic acid ac-diamide synthase
berkeley_reactor_200306_biofilm_scaffold_34479_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10418..11098)
DNA (681bp) protein (227aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
gidB; 16S rRNA methyltransferase GidB (EC:2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1F0_9BRAD
berkeley_reactor_200306_biofilm_scaffold_34479_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11404..13275)
DNA (1872bp) protein (624aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhodovulum sp. PH10 RepID=J5PT70_9RHOB
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
berkeley_reactor_200306_biofilm_scaffold_34479_12
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13340..14644)
DNA (1305bp) protein (435aa)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
tRNA modification GTPase MnmE n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=MNME_METPB
trmE; tRNA modification GTPase TrmE
berkeley_reactor_200306_biofilm_scaffold_34479_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14770..16788
DNA (2019bp) protein (673aa)
Thymidylate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHR3_9RHOB
Thymidylate kinase {ECO:0000313|EMBL:EJW13069.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16840..18105)
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Transcription termination factor Rho n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGC6_XANP2
rho; transcription termination factor Rho
berkeley_reactor_200306_biofilm_scaffold_34479_15
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18373..18813)
DNA (441bp) protein (147aa)
membrane protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000349B68F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB79662.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_34479_16
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18823..19851)
DNA (1029bp) protein (343aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SEK5_9BRAD
berkeley_reactor_200306_biofilm_scaffold_34479_17
bacterium YEK0313, Bacteria

Not on your lists

20365..21204
DNA (840bp) protein (280aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ06_9RHIZ
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_18
bacterium YEK0313, Bacteria

Not on your lists

21217..21828
DNA (612bp) protein (204aa)
Maf-like protein SL003B_0070 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYJ6_POLGS
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Maf-like protein
berkeley_reactor_200306_biofilm_scaffold_34479_19
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21960..22796
DNA (837bp) protein (279aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
shikimate 5-dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI00035FCDEB
shikimate 5-dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_34479_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23019..23636
DNA (618bp) protein (206aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Dephospho-CoA kinase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGD2_XANP2
dephospho-CoA kinase
berkeley_reactor_200306_biofilm_scaffold_34479_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23636..24337
DNA (702bp) protein (234aa)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ACE98863.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACE98863.1};; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
DNA polymerase III, epsilon subunit n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q8B4_RHOPT
DNA polymerase III subunit epsilon
berkeley_reactor_200306_biofilm_scaffold_34479_22
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24366..24860)
DNA (495bp) protein (165aa)
Protein-export protein SecB n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QLJ5_METTR
secB; preprotein translocase subunit SecB
Protein-export protein SecB {ECO:0000255|HAMAP-Rule:MF_00821}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_34479_23
bacterium YEK0313, Bacteria

Not on your lists

comp(25089..25646)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003781E2C
Uncharacterized protein {ECO:0000313|EMBL:CEJ12346.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
peptidase
berkeley_reactor_200306_biofilm_scaffold_34479_24
bacterium YEK0313, Bacteria

Not on your lists

comp(25727..26635)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F75BF6
Ribokinase {ECO:0000313|EMBL:CEJ16172.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_25
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26632..27267)
DNA (636bp) protein (212aa)
2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=alpha proteobacterium L41A RepID=UPI000376F3A8
KDPG and KHG aldolase
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
berkeley_reactor_200306_biofilm_scaffold_34479_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27281..28159)
DNA (879bp) protein (293aa)
2-dehydro-3-deoxygalactonokinase {ECO:0000313|EMBL:KFC70924.1}; EC=2.7.1.58 {ECO:0000313|EMBL:KFC70924.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2-keto-3-deoxy-galactonokinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPB8_9RHIZ
2-oxo-3-deoxygalactonate kinase
berkeley_reactor_200306_biofilm_scaffold_34479_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28197..28958)
DNA (762bp) protein (254aa)
Putative short-chain dehydrogenase/reductase, FabG-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2S6_POLGS
short-chain dehydrogenase
Putative short-chain dehydrogenase/reductase, FabG-like protein {ECO:0000313|EMBL:ADZ72100.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_34479_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29181..30272
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FA6D4F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHK47125.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_34479_29
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30423..32699
DNA (2277bp) protein (759aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003634D5C
Permease protein of sugar ABC transporter {ECO:0000313|EMBL:CCV14459.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_34479_30
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32711..33487
DNA (777bp) protein (259aa)
ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ECC24E
Putative sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CCV07499.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
sugar ABC transporter ATP-binding protein
Displaying items 1-30 of 142 in total

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