ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_34479

Search features with annotation key words

Displaying items 121-142 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_34479_121
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136031..137926
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003812F97
ABC-type oligopeptide transport system, periplasmic component {ECO:0000313|EMBL:EIM25820.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
family 5 extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_34479_122
bacterium YEK0313, Bacteria

Not on your lists

137923..139752
DNA (1830bp) protein (610aa)
Bacterial extracellular solute-binding proteins, family 5 n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JJE0_OLICO
Glutathione-binding protein GsiB {ECO:0000313|EMBL:CEJ11495.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
yejA2; subrate binding protein YejA
berkeley_reactor_200306_biofilm_scaffold_34479_123
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139879..142596
DNA (2718bp) protein (906aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:CDY75329.1}; EC=3.1.4.46 {ECO:0000313|EMBL:CDY75329.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H5T3_9BRAD
glycerophosphodiester phosphodiesterase
berkeley_reactor_200306_biofilm_scaffold_34479_124
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(142710..143150)
DNA (441bp) protein (147aa)
50S ribosomal protein L19 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZF5_9RHIZ
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
50S ribosomal protein L19
berkeley_reactor_200306_biofilm_scaffold_34479_125
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143263..143556)
DNA (294bp) protein (98aa)
Plasmid stabilization system n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZW8_9RHIZ
Plasmid stabilization system {ECO:0000313|EMBL:EHK53721.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
stabilisation protein
berkeley_reactor_200306_biofilm_scaffold_34479_126
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143553..143783)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZW9_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53722.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
berkeley_reactor_200306_biofilm_scaffold_34479_127
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143857..144552)
DNA (696bp) protein (232aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QQD0_METTR
berkeley_reactor_200306_biofilm_scaffold_34479_128
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144549..145184)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377E162
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
berkeley_reactor_200306_biofilm_scaffold_34479_129
bacterium YEK0313, Bacteria

Not on your lists


comp(145223..145582)
DNA (360bp) protein (120aa)
30S ribosomal protein S16 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=RS16_AZOC5
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
rpsP; 30S ribosomal protein S16
berkeley_reactor_200306_biofilm_scaffold_34479_130
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(145632..147191)
DNA (1560bp) protein (520aa)
Ffh, signal recognition particle protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FA271C
signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
berkeley_reactor_200306_biofilm_scaffold_34479_131
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(147910..148758)
DNA (849bp) protein (283aa)
Cobyrinic acid ac-diamide synthase n=2 Tax=Paenibacillus polymyxa RepID=E3EC89_PAEPS
cobyrinic acid ac-diamide synthase
Chromosome partitioning protein {ECO:0000313|EMBL:ADO54232.1}; TaxID=886882 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa).;"
berkeley_reactor_200306_biofilm_scaffold_34479_132
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148914..149213)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7XZV4_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88168.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_34479_133
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

149322..150293
DNA (972bp) protein (324aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002E661D1
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABO54884.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
berkeley_reactor_200306_biofilm_scaffold_34479_134
Ewingella americana, Ewingella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150447..151448
DNA (1002bp) protein (334aa)
Sugar ABC transporter periplasmic sugar-binding protein n=1 Tax=Serratia sp. M24T3 RepID=I0QME0_9ENTR
Periplasmic substrate-binding component of an ABC superfamily nucleoside transporter {ECO:0000313|EMBL:KFC78825.1}; TaxID=910964 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Ewingella.;" source="Ewingella americana ATCC 33852.;"
sugar ABC transporter periplasmic sugar-binding protein
berkeley_reactor_200306_biofilm_scaffold_34479_135
Erwinia billingiae, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151560..153107
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000378FCB1
sugar ABC transporter ATP-binding protein
Sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAX61696.1}; TaxID=634500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia billingiae (strain Eb661).;"
berkeley_reactor_200306_biofilm_scaffold_34479_136
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153104..154204
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036E34CC
Sugar ABC transporter permease {ECO:0000313|EMBL:EIC82461.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_34479_137
Enterobacter cancerogenus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154201..155136
DNA (936bp) protein (312aa)
Putative ABC-type transport system, permease component n=1 Tax=Pantoea sp. GM01 RepID=J2L4P0_9ENTR
Sugar ABC transporter permease {ECO:0000313|EMBL:KGT87186.1}; TaxID=69218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cancerogenus.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_34479_138
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155165..156679
DNA (1515bp) protein (505aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.26)
Putative Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (Acyl-CoA synthetase) (Putative fadD) {ECO:0000313|EMBL:CAX23989.1}; EC=6.2.1.26 {ECO:0000313|EMBL:CAX23989.1};; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
Putative Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase) (Acyl-CoA synthetase) (Putative fadD) n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CL44_METED
berkeley_reactor_200306_biofilm_scaffold_34479_139
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

156693..157493
DNA (801bp) protein (267aa)
Creatininase n=1 Tax=Paenibacillus terrae (strain HPL-003) RepID=G7VQ77_PAETH
creatininase
Creatininase {ECO:0000313|EMBL:AET61146.1}; TaxID=985665 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus terrae (strain HPL-003).;"
berkeley_reactor_200306_biofilm_scaffold_34479_140
bacterium YEK0313, Bacteria

Not on your lists

157865..158377
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa (strain PA7) RepID=A6UXB6_PSEA7
Uncharacterized protein {ECO:0000313|EMBL:CEJ15754.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_141
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158391..159656
DNA (1266bp) protein (422aa)
Metallophosphoesterase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y161_9RHIZ
Metallophosphoesterase {ECO:0000313|EMBL:EMS40947.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
Metallophosphoesterase
berkeley_reactor_200306_biofilm_scaffold_34479_142
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159653..160630
DNA (978bp) protein (326aa)
Smc domain-containing protein n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LDN7_9RHIZ
Smc domain-containing protein {ECO:0000313|EMBL:EIZ82779.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
protein of unassigned function
Displaying items 121-142 of 142 in total

View Taxonomy