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berkeley_reactor_200306_biofilm_scaffold_34479

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Displaying items 91-120 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_34479_91
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108810..110000)
DNA (1191bp) protein (397aa)
Chromate transporter protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VGD0_9RHIZ
Chromate transporter protein {ECO:0000313|EMBL:EJZ18077.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
chromate transporter protein
berkeley_reactor_200306_biofilm_scaffold_34479_92
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110032..110424)
DNA (393bp) protein (131aa)
aldehyde-activating protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A2FCC
glutathione-dependent formaldehyde-activating enzyme family protein
Glutathione-dependent formaldehyde-activating enzyme family protein {ECO:0000313|EMBL:AIO64898.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
berkeley_reactor_200306_biofilm_scaffold_34479_93
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110524..111294)
DNA (771bp) protein (257aa)
Methyltransferase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0V0_9PROT
Methyltransferase {ECO:0000313|EMBL:EGY00855.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
type 11 methyltransferase
berkeley_reactor_200306_biofilm_scaffold_34479_94
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111387..112193
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037F2ECA
hypothetical protein
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ADG14869.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
berkeley_reactor_200306_biofilm_scaffold_34479_95
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

112282..113244
DNA (963bp) protein (321aa)
Putative peptidase S49 family signal peptide peptidase SppA {ECO:0000313|EMBL:KFC75594.1}; EC=3.4.21.- {ECO:0000313|EMBL:KFC75594.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Signal peptide peptidase SppA, 36K type n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKV7_BEII9
signal peptide peptidase SppA, 36K type
berkeley_reactor_200306_biofilm_scaffold_34479_96
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113320..113622
DNA (303bp) protein (101aa)
Integration host factor subunit beta n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SAQ5_9BRAD
ihfB; integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
berkeley_reactor_200306_biofilm_scaffold_34479_97
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113619..113969
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYM3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG67993.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_98
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114130..115089
DNA (960bp) protein (320aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:KFG67992.1}; EC=4.3.1.12 {ECO:0000313|EMBL:KFG67992.1};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ornithine cyclodeaminase (EC:4.3.1.12)
Putative ornithine cyclodeaminase, mu-crystallin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYM2_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_34479_99
Arthrobacter sp. AK-YN10, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(115116..116099)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. AK-YN10 RepID=U1ZX88_9MICC
Ribose ABC transporter permease {ECO:0000313|EMBL:ERI37232.1}; TaxID=1349820 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-YN10.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_34479_100
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(116105..117589)
DNA (1485bp) protein (495aa)
ABC transporter n=1 Tax=Burkholderia sp. SJ98 RepID=K8R665_9BURK
ABC transporter {ECO:0000313|EMBL:KAK46650.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_34479_101
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(117685..118710)
DNA (1026bp) protein (342aa)
Monosaccharide-transporting ATPase n=1 Tax=Burkholderia sp. SJ98 RepID=K8R7S1_9BURK
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EKS69569.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
monosaccharide ABC transporter substrate-binding protein CUT2 family
berkeley_reactor_200306_biofilm_scaffold_34479_102
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118890..119969)
DNA (1080bp) protein (360aa)
UPI0003D01561 related cluster n=1 Tax=unknown RepID=UPI0003D01561
Saccharopine dehydrogenase {ECO:0000313|EMBL:ESZ39794.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_103
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120092..120517
DNA (426bp) protein (142aa)
AsnC family transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031E9972
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:KFC65257.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AsnC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_34479_104
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120643..120942)
DNA (300bp) protein (100aa)
plasmid stabilization protein n=1 Tax=Methylocystis rosea RepID=UPI000380CBEF
Plasmid stabilization system protein {ECO:0000313|EMBL:EYR79541.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
plasmid stabilization protein
berkeley_reactor_200306_biofilm_scaffold_34479_105
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120942..121193)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037FA64C
Uncharacterized protein {ECO:0000313|EMBL:CDX28640.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_106
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121327..122493)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000368AC48
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EIM27556.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
oxygen-independent coproporphyrinogen III oxidase
berkeley_reactor_200306_biofilm_scaffold_34479_107
unknown

Not on your lists

122574..122723
DNA (150bp) protein (50aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_34479_108
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122889..123623
DNA (735bp) protein (245aa)
Metallophosphoesterase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETR9_METSB
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACK52421.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_34479_109
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123702..124286)
DNA (585bp) protein (195aa)
Restriction endonuclease n=1 Tax=Microvirga sp. WSM3557 RepID=I4YT92_9RHIZ
Restriction endonuclease {ECO:0000313|EMBL:EIM27184.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
HNH endonuclease
berkeley_reactor_200306_biofilm_scaffold_34479_110

Not on your lists

124538..125569
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000363D7E9
Uncharacterized protein {ECO:0000313|EMBL:KKN94441.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_111
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125597..126151)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D54F43
ChaC family protein {ECO:0000313|EMBL:KFC73141.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ChaC family protein
berkeley_reactor_200306_biofilm_scaffold_34479_112
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(126148..127053)
DNA (906bp) protein (302aa)
N-formylglutamate deformylase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J0R6_9RHOB
N-formylglutamate deformylase {ECO:0000313|EMBL:EJW10665.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
N-formylglutamate amidohydrolase
berkeley_reactor_200306_biofilm_scaffold_34479_113
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127326..127730
DNA (405bp) protein (135aa)
MFS transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030FF40A
Response regulator receiver {ECO:0000313|EMBL:KFC74085.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
response regulator receiver; CheY-like protein
berkeley_reactor_200306_biofilm_scaffold_34479_114
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127766..129199)
DNA (1434bp) protein (478aa)
Citrate transporter n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDH2_MESCW
Uncharacterized protein {ECO:0000313|EMBL:CDX15922.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
citrate transporter
berkeley_reactor_200306_biofilm_scaffold_34479_115
bacterium YEK0313, Bacteria

Not on your lists

129439..130941
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000374D1A1
Putative diguanylate cyclase YedQ {ECO:0000313|EMBL:CEJ09780.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
PAS/PAC sensor-containing diguanylate cyclase
berkeley_reactor_200306_biofilm_scaffold_34479_116
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131074..132261)
DNA (1188bp) protein (396aa)
Putative peptidoglycan-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IJE4_BORPD
peptidoglycan-binding protein
Putative peptidoglycan-binding protein {ECO:0000313|EMBL:CAP42205.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
berkeley_reactor_200306_biofilm_scaffold_34479_117
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132313..132897)
DNA (585bp) protein (195aa)
ATP--cobalamin adenosyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UAF1_METS4
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:KFC73267.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ATP--cobalamin adenosyltransferase
berkeley_reactor_200306_biofilm_scaffold_34479_118
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(132932..133123)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003802C09
hypothetical protein
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51034.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
berkeley_reactor_200306_biofilm_scaffold_34479_119
bacterium YEK0313, Bacteria

Not on your lists

133267..134652
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035FBFD3
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CEJ10610.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
PST family polysaccharide export protein
berkeley_reactor_200306_biofilm_scaffold_34479_120
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134688..135938
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000379C7C9
Mlr3471 protein {ECO:0000313|EMBL:CDP53829.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
Displaying items 91-120 of 142 in total

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