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berkeley_reactor_200306_biofilm_scaffold_34479

Search features with annotation key words

Displaying items 61-90 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_34479_61
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69365..69787
DNA (423bp) protein (141aa)
Putative hemoprotein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IPS1_AZOC5
hemoprotein
Putative hemoprotein {ECO:0000313|EMBL:BAF86681.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_34479_62
bacterium YEK0313, Bacteria

Not on your lists

69808..71034
DNA (1227bp) protein (409aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDN3_METS4
Nitrite reductase [NAD(P)H] {ECO:0000313|EMBL:CEJ16262.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_34479_63
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71031..72785
DNA (1755bp) protein (585aa)
Precorrin-3B synthase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDN4_METS4
nirA; ferredoxin-nitrite reductase
Precorrin-3B synthase {ECO:0000313|EMBL:ACA18127.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_34479_64
bacterium YEK0313, Bacteria

Not on your lists

72782..74389
DNA (1608bp) protein (536aa)
Assimilatory nitrate reductase large subunit n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMW5_9BRAD
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000313|EMBL:CEJ12827.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
sulfite reductase
berkeley_reactor_200306_biofilm_scaffold_34479_65
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74389..77055
DNA (2667bp) protein (889aa)
molybdopterin oxidoreductase (EC:1.7.99.4)
Molybdopterin oxidoreductase {ECO:0000313|EMBL:ACL57816.1}; EC=1.7.99.4 {ECO:0000313|EMBL:ACL57816.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Molybdopterin oxidoreductase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IGU1_METNO
berkeley_reactor_200306_biofilm_scaffold_34479_66
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77077..77913)
DNA (837bp) protein (279aa)
Conserved hypothetical transferase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YLA2_MOBAS
Conserved hypothetical transferase {ECO:0000313|EMBL:EAS51829.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_67
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78197..80461
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI81_9RHIZ
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAN00334.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_68
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80575..81687
DNA (1113bp) protein (371aa)
6-phosphogluconolactonase (EC:3.1.1.31)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003766A47
Uncharacterized protein {ECO:0000313|EMBL:KKC32268.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
berkeley_reactor_200306_biofilm_scaffold_34479_69
unknown

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81999..82226
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_34479_70
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82315..84072
DNA (1758bp) protein (586aa)
Sugar ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JI35_AGRRK
Sulfonate ABC transporter permease {ECO:0000313|EMBL:KJF74845.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
sugar ABC transporter
berkeley_reactor_200306_biofilm_scaffold_34479_71
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84209..85540
DNA (1332bp) protein (444aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Rhizobium sp. AP16 RepID=J2WBF9_9RHIZ
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EJK79960.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
aliphatic sulfonates ABC transporter
berkeley_reactor_200306_biofilm_scaffold_34479_72
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85643..86701
DNA (1059bp) protein (353aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Serine/threonine kinase protein of two-component system n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JI33_AGRRK
serine/threonine kinase of two-component system
berkeley_reactor_200306_biofilm_scaffold_34479_73
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86704..87330
DNA (627bp) protein (209aa)
Two-component nodulation response regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JI32_AGRRK
nodW; two-component nodulation response regulator protein
Response regulator {ECO:0000313|EMBL:EJK79958.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_34479_74
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87671..88435
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0R3_RHILW
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ACI58197.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
berkeley_reactor_200306_biofilm_scaffold_34479_75
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88585..89628
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CF3A4
Uncharacterized protein {ECO:0000313|EMBL:KGM34428.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_76
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

89829..91352
DNA (1524bp) protein (508aa)
putative L-xylulose kinase (EC:2.7.1.53)
Carbohydrate kinase, FGGY family protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6B4_9FIRM
Tax=GWC1_Treponema_61_84_curated
berkeley_reactor_200306_biofilm_scaffold_34479_77
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91801..94425
DNA (2625bp) protein (875aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
D-ribose transporter ATP binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035FF4B3
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_34479_78
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94422..95468
DNA (1047bp) protein (349aa)
ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003829DFC
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACS60771.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_34479_79
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95490..96503
DNA (1014bp) protein (338aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035DF6CC
rhamnose ABC transporter, periplasmic rhamnose-binding protein
Rhamnose ABC transporter, periplasmic rhamnose-binding protein {ECO:0000313|EMBL:ACS60770.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_34479_80
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96602..99052)
DNA (2451bp) protein (817aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
DNA gyrase subunit B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003021B97
berkeley_reactor_200306_biofilm_scaffold_34479_81
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99275..99847)
DNA (573bp) protein (191aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
DNA gyrase subunit B n=1 Tax=Methylobacterium sp. MB200 RepID=UPI0003480317
DNA gyrase subunit B
berkeley_reactor_200306_biofilm_scaffold_34479_82
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100196..100993
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000379F713
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ACA16300.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_34479_83
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101002..101619)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000300378B
lysine transporter LysE
Lysine transporter LysE {ECO:0000313|EMBL:AJC17412.1}; TaxID=93222 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
berkeley_reactor_200306_biofilm_scaffold_34479_84
unknown

Not on your lists

comp(101686..101850)
DNA (165bp) protein (55aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_34479_85
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102033..102761)
DNA (729bp) protein (243aa)
Nucleotidyl transferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LCP4_9RHIZ
Nucleotidyl transferase {ECO:0000313|EMBL:EIZ82384.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
nucleotidyl transferase
berkeley_reactor_200306_biofilm_scaffold_34479_86
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102758..104296)
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000370AB4A
ATPase, YjeE family {ECO:0000313|EMBL:EIM29053.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_34479_87
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104346..106895)
DNA (2550bp) protein (850aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E20D9D
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_34479_88
unknown

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107128..107667
DNA (540bp) protein (180aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_34479_89
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

107889..108554
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034C923C
Uncharacterized protein {ECO:0000313|EMBL:KIJ74916.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_34479_90
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108512..108721)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYU2_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91061.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Displaying items 61-90 of 142 in total

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