ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_34479_14

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(16840..18105)

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 422.0
  • Bit_score: 746
  • Evalue 1.80e-212
Transcription termination factor Rho n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGC6_XANP2 similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 422.0
  • Bit_score: 746
  • Evalue 1.30e-212
rho; transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 422.0
  • Bit_score: 746
  • Evalue 3.70e-213

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Xanthobacter autotrophicus → Xanthobacter → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1266
ATGCGGGACATCAAACTTCAGGATCTCAAGTCCAAGACTCCGATCGAAATGCTCGCCTTCGCCGAAGAGCTCGAGGTCGAGAACGCCTCCTCCATGCGCAAGCAGGAGCTGATGTTCGCGGTGCTCAAGCAGCTCGCCAGCCGCGAGGTCGAGATCGTCGGCGAGGGCGTCGTCGAGGTTCTGCAGGACGGCTTCGCCTTCCTGCGCTCTCCCGACGCCAATTATCTGCCCGGCCCTGACGACATCTATGTGTCGCCTTCGCAGATCCGCAAATTCGGCCTGCGCACCGGCGACACGGTCGAAGGCATCATCCGCAGCCCGAAGGACGGCGAGCGCTATTTCGCCCTGCTCAAGGTCAACACGATCAACTTCGAGGACCCGGAAAAGGCCAAGCACAAGGTCAATTTCGACAATCTCACGCCGCTCTACCCCAATCGCCGCCTGAAGCTGGAGATCGGCGAGCAGGGCAAGAAGGACTATTCGGCCCGCGTCATCGACGTCGTCGCGCCGATCGGCATGGGCCAGCGCGCCCTGATCGTGGCGCCGCCGCGCATCGGCAAGACGGTGCTCCTGCAGAACATCGCCCAGTCGATCACCGCCAACCACCCGGAATGCTACCTCATCGTGCTGCTCATCGACGAGCGGCCGGAGGAAGTCACCGACATGCAGCGCTCCGTGAAGGGCGAGGTGGTGTCCTCCACCTTCGACGAGCCGGCGGCGCGTCACGTCCAGGTCTCGGAAATGGTGATCGAGAAGGCCAAGCGCCTGGTCGAGCACGGCCGCGACGTGGTCATCCTGCTCGATTCGATCACCCGCCTCGGCCGCGCCTACAACACCGTGGTGCCGTCCTCCGGCAAGGTGCTGACCGGCGGCGTCGATGCCAACGCCCTGCAGCGGCCGAAGCGCTTCTTCGGCGCGGCCCGCAACATCGAGGAGGGCGGCTCGCTGACCATCATCGCGACCGCGCTGATCGACACCGGCTCGCGCATGGACGAAGTGATCTTCGAAGAGTTCAAGGGCACCGGCAATTCCGAAATCATCCTCGACCGCAAGGTCTCGGACAAGCGCGTGTTCCCGGCGATCGACATCACCCGGTCCGGCACCCGCAAGGAGGAGCTGCTGGTGGCGCCCGACATCCTCAAGAAGATGTATGTGCTGCGCCGCATCCTCAATCCGATGGGCACGGTCGACGCCATCGAGTTCCTGCTCGACAAGCTGCGCCAGACGAAGGTCAACGCCGACTTCTTCGACTCGATGAACACGTGA
PROTEIN sequence
Length: 422
MRDIKLQDLKSKTPIEMLAFAEELEVENASSMRKQELMFAVLKQLASREVEIVGEGVVEVLQDGFAFLRSPDANYLPGPDDIYVSPSQIRKFGLRTGDTVEGIIRSPKDGERYFALLKVNTINFEDPEKAKHKVNFDNLTPLYPNRRLKLEIGEQGKKDYSARVIDVVAPIGMGQRALIVAPPRIGKTVLLQNIAQSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAARHVQVSEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPAIDITRSGTRKEELLVAPDILKKMYVLRRILNPMGTVDAIEFLLDKLRQTKVNADFFDSMNT*