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berkeley_reactor_200306_biofilm_scaffold_34479_19

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 21960..22796

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.9
  • Coverage: 274.0
  • Bit_score: 343
  • Evalue 2.40e-91
shikimate 5-dehydrogenase n=1 Tax=Xanthobacteraceae RepID=UPI00035FCDEB similarity UNIREF
DB: UNIREF100
  • Identity: 62.8
  • Coverage: 274.0
  • Bit_score: 347
  • Evalue 1.20e-92
shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 63.9
  • Coverage: 274.0
  • Bit_score: 343
  • Evalue 4.80e-92

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Taxonomy

Starkeya novella → Starkeya → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 837
ATGAGACGAGCCTGCGTCATCGGCTATCCCGTCAAGCATTCGCGCTCGCCGATGATCCACGGCTTCTGGCTGGCCGAGCGCGGCATTGCCGGCAGCTATGGCCGCGAGGAAGTGGCGCCGGAGGATTTCGACCGCTTCGTCGCCGGCCTCGCCGATGCCGGCTATGCCGGCGGCAACGTCACCGTGCCGCACAAGGCGGCAGCCTTCCGCCTCGCAGCGGTGGACGACCCCGTCGCCATGGCGCTGGAGGCGGTCAACACGCTCTGGTTCGAGGACGGCGTGCTCCGCGGCATGAACACCGATGCCGCCGGCTTCCTGGCCAATCTCGACCAGGAGGCGCCGGGCTGGGACGGCGGGCTCGGCAAGGCGGCGGTGCTGGGCGCGGGCGGCGCCGCCCGGGCGATCGTCCACGCGCTGCTGGCGCGCGGGGCGGAGCGGGTGGTGATCGTCAACCGCACCCTGGCCCGCGCCGAGGAGCTCGCCGCCCGCTTCGGCCCGCGGGCCGTGGCCGCCGGCTGGGACGAGGCGGCATCCGCCCTCGACGGGGCGGCCTGCCTGGTCAACACCACCTCGCTCGGCATGGCTGGCCAGCCCGCGCTCGATCTCGACCTCGCCGCCCTGCCGGCCGGAGCGCTCGTCACCGACATCGTCTATGTCCCGATCGAGACGCCGCTGCTGGCGTTGGCGCGGCGGCGCGGCCATCCCGTCGTCGACGGCCTCGGCATGCTGCTGCATCAGGCGGTGCCGGGCTTCGAGCGCTGGTTCGGCGAGCGGCCGGCGGTGACGCCGGCGCTGCGCGCGCTCGTGCTCGGCGATATCATGGCGCATACGGCCTGA
PROTEIN sequence
Length: 279
MRRACVIGYPVKHSRSPMIHGFWLAERGIAGSYGREEVAPEDFDRFVAGLADAGYAGGNVTVPHKAAAFRLAAVDDPVAMALEAVNTLWFEDGVLRGMNTDAAGFLANLDQEAPGWDGGLGKAAVLGAGGAARAIVHALLARGAERVVIVNRTLARAEELAARFGPRAVAAGWDEAASALDGAACLVNTTSLGMAGQPALDLDLAALPAGALVTDIVYVPIETPLLALARRRGHPVVDGLGMLLHQAVPGFERWFGERPAVTPALRALVLGDIMAHTA*