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berkeley_reactor_200306_biofilm_scaffold_34479_16

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(18823..19851)

Top 3 Functional Annotations

Value Algorithm Source
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.3
  • Coverage: 339.0
  • Bit_score: 446
  • Evalue 1.90e-122
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37) similarity KEGG
DB: KEGG
  • Identity: 64.0
  • Coverage: 339.0
  • Bit_score: 442
  • Evalue 7.20e-122
Uroporphyrinogen decarboxylase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SEK5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 64.3
  • Coverage: 339.0
  • Bit_score: 446
  • Evalue 1.30e-122

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Taxonomy

Bradyrhizobium sp. ORS 375 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1029
ATGCAAAAGCCGCTTCTTCGCGTTCTCAACGGCGAGACGCTCGCCGTTCCTCCGGTCTGGATGATGCGGCAGGCCGGCCGCTATCTGCCGGAATACCGCGAGGTGCGGGCGAAGGCAGGCAGCTTCCTGGAGCTGTGCTACACGCCCGACCTGGCGGCAGAGGTGACCCTGCAGCCGATCCGGCGCTTCGGCTTCGACGCCGCCATCCTGTTCTCCGATATCCTGGTGGTGCCGGATGCGCTCGGCCAAGCCGTGCGTTTCGAGGAGGGCGAGGGGCCGCGGCTCAACCCGATCCCGGACGCGCGCGGCCTGCGGCGCCTGCACGAGCGCATCGACCTCGACCGGCTCGGGCCGGTGTTCGAGACCATCCGCCGGGTCAAGGGCGAGCTGCCCGGCGACGTGGCGCTGCTCGGCTTCTGCGGCGCGCCCTGGACCGTGGCGACCTACATGGTCGCCGGCAGGGGCACGCCGGACCAGGCGCCGGCCCGGCTCTGGGCCTATCGCGATCCCGACGGGTTCGAAGAGCTGATCGATCGTCTGGTGGACGCCTCCTGCGCCTATCTCGGCGCGCAGATCGAGGCGGGCGTCGATGCCGTGCAGATCTTCGACAGCTGGGCCGGGACGCTGGCGCCGGACGAGTTCCGCCGCTGGGCCATGGACCCGGTCGCCCGGATCGTCGCCTATCTCCGGGAGCATCATCCGCAGGCCGGGATCATCGGCTTTCCCCGCGGTGCCGGAACCTTGTACGAGACCTATGCCCGCCATGTCGGCGTCGACGCGATCGGGCTGGACTGGTCGGTGGACTGGGCCTGGGCAGGACAGGTCCTGCAGCCGGTGAAGCCGGTGCAGGGCAATCTCGACCCGCTGGTGCTGGTGGCCGGGGGCCCCGCGCTCGACGCGGCCGTCGACGGCATCCTGGCCGGGCTCGGCAAGGGGCCGTTGATTTTCAACCTCGGCCACGGCATCACGCCTGAGACGCCGATCGCCCATGTGGAACGCATGCTGGCCCGGGTTCGCAAGGCACGGTAG
PROTEIN sequence
Length: 343
MQKPLLRVLNGETLAVPPVWMMRQAGRYLPEYREVRAKAGSFLELCYTPDLAAEVTLQPIRRFGFDAAILFSDILVVPDALGQAVRFEEGEGPRLNPIPDARGLRRLHERIDLDRLGPVFETIRRVKGELPGDVALLGFCGAPWTVATYMVAGRGTPDQAPARLWAYRDPDGFEELIDRLVDASCAYLGAQIEAGVDAVQIFDSWAGTLAPDEFRRWAMDPVARIVAYLREHHPQAGIIGFPRGAGTLYETYARHVGVDAIGLDWSVDWAWAGQVLQPVKPVQGNLDPLVLVAGGPALDAAVDGILAGLGKGPLIFNLGHGITPETPIAHVERMLARVRKAR*