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berkeley_reactor_200306_biofilm_scaffold_34479_34

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 37708..39480

Top 3 Functional Annotations

Value Algorithm Source
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CC46_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 56.1
  • Coverage: 588.0
  • Bit_score: 633
  • Evalue 1.70e-178
ABC transporter permease {ECO:0000313|EMBL:KJC47041.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.4
  • Coverage: 599.0
  • Bit_score: 652
  • Evalue 3.90e-184
polyamine ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 53.6
  • Coverage: 567.0
  • Bit_score: 621
  • Evalue 1.50e-175

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Taxonomy

Bradyrhizobium sp. LTSP849 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1773
ATGACCGATATCGCCTCGCGGCCGGCCATGATCGGGGCGGGATGGCGCGCGCGGGCCGGCTGGCGCAATCCGCTGTGGCTGGCCCTCCCCGGCATCGTCTTCCTCGTCCTGTTCCTCGCCTATCCCGCGCTGCAGCTCCTGTCGCTCAGCGTTATCGACCCGCAGGGCGGCGGCCTCTCACTCGCCGCCTTCCGGCGTCTGCTCACCACGCCGGTCTATCTCCGCGTGCTGACCACCACCTTCGTCGTCGCGGCGCAGACGACGGCGCTCTGCCTGCTGTTCGGCTATCCCCTGGCCTATTGGCTGGCCCGGCAGCCGGCCCGGCGCCAGCAGGGCCTGATGCTCCTGGTGCTGCTGCCGTTCTGGACCAGCCCCCTGGTGCTGAACTTCGCCTGGCTGGTGCTGCTCGGGCGCAACGGCGCCGTGGCGGGCGCCCTGATGGCGCTCGGCATCGACCATCCGCCGGACCTGCTGTTCGGCCGCGGCACCGTGCTGTTCGCGCTGACCCACAGCATGCTGCCGCTCGCCGTGGTCACCATGCTGCCGACGATGAGCCAGATCGACGAGCGCCTGCCGCGGGCGGCCGCCACCCTCGGCGCCAGCGGCGGCCAGCGGTTCTGGCGCGTCTGGTTCCACCTCTCCATGCCCGGCGTGGCGGCGGCCGGGCTGCTCGTCTTCGTCAACTCGGTCGGCTTCTTCATCACCCCCGCCATCCTCGGCGGGCCGCAGGAGACGATGCTCAGCCAATTGATCATCAACCAGATCCAGAAGCTGCAGAACTGGCCCTTCGGCGCGGCGCTCGCCGCCATGCTGATCGCCGCGGCGCTGCTGACCTGCATCGTCTACGACTATGCCTTCGGCCTGTCCTCGGTGTCGGGCGGCGCGGATGCCAAGACCGGCCGGCGCCGCGGCTGGCCGCGGCGGCTCGGCATGCGGGCGCTGGCCGGCCTGGCCGCGGCGACCGACGCGGTGGACCGAGCGGTCGGCGGCCATCGCCTGGGCTGGCTGCTGCCGACCTACGCCATCGGCCTCGTCGTGCTGTCGCTGCTGCCGATCGTCGCCTTCATCCCCATGGGCTTCACCAGCTCGAACTTCCTGTCCTTCCCGCCGCCGGGCTTCAGCACCCGCTGGTTCGAGGCCTATCTGGAATCGCCGGTCTGGATCGCCGCCACCATCCGCTCCTTCGGCATCGGGCTGGTCACGGCGGCGGTGACGCTGCTCATCGCGGCGATGGGCGCCTTCGGCATCGCCAGGACCGAGAGCCGCTGGGCGGGCCTGGGCTTCGTCCTGTTCCTGATGCCGATGGTGGTGCCGCCGATCGTCATCGCCATCGCGCTGTTCTACCTCTTCGCCGGCGTCGGCCTGGTGGCGACCGACCTCGGAATCGTCATCGGCCACACCGTCACCGCCATCCCGATCGCCTTCGTCGTCATCCTGGCGACGCTGAAGGGCCATGACTGGCGCTACGATCAGGCGGCGGCCACCCTGGGCGCCAGCCGGTCCAAGGTGCTGGCGCGCGTCACCATCCCGCTGATCCGCAAGGGCCTGTTCGCCGCCTTCATCTTCGCCTTCCTGCAGTCCTTCCAGGAATTGACCATCGCCATGTTCATCGGCGGCGGGCTGAAGACGACGCTGCCCAAGCAGATGTGGGACGACGTCAACCTGCAGGTGAACCCGACGCTGGCGGCGGCCTCCGTGGTGGTCATGGTCGTCGTCACCGGCCTGTTCCTCGTCGCCGGCCGGCTGCGGATGGGCTCTTCGCGCAGCGCCTGA
PROTEIN sequence
Length: 591
MTDIASRPAMIGAGWRARAGWRNPLWLALPGIVFLVLFLAYPALQLLSLSVIDPQGGGLSLAAFRRLLTTPVYLRVLTTTFVVAAQTTALCLLFGYPLAYWLARQPARRQQGLMLLVLLPFWTSPLVLNFAWLVLLGRNGAVAGALMALGIDHPPDLLFGRGTVLFALTHSMLPLAVVTMLPTMSQIDERLPRAAATLGASGGQRFWRVWFHLSMPGVAAAGLLVFVNSVGFFITPAILGGPQETMLSQLIINQIQKLQNWPFGAALAAMLIAAALLTCIVYDYAFGLSSVSGGADAKTGRRRGWPRRLGMRALAGLAAATDAVDRAVGGHRLGWLLPTYAIGLVVLSLLPIVAFIPMGFTSSNFLSFPPPGFSTRWFEAYLESPVWIAATIRSFGIGLVTAAVTLLIAAMGAFGIARTESRWAGLGFVLFLMPMVVPPIVIAIALFYLFAGVGLVATDLGIVIGHTVTAIPIAFVVILATLKGHDWRYDQAAATLGASRSKVLARVTIPLIRKGLFAAFIFAFLQSFQELTIAMFIGGGLKTTLPKQMWDDVNLQVNPTLAAASVVVMVVVTGLFLVAGRLRMGSSRSA*