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berkeley_reactor_200306_biofilm_scaffold_48742_11

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 11100..12002

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MPU0_CORCM similarity UNIREF
DB: UNIREF100
  • Identity: 69.6
  • Coverage: 299.0
  • Bit_score: 415
  • Evalue 2.90e-113
yhjC2; LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 69.6
  • Coverage: 299.0
  • Bit_score: 415
  • Evalue 8.20e-114
LysR family transcriptional regulator {ECO:0000313|EMBL:AFE11013.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.6
  • Coverage: 299.0
  • Bit_score: 415
  • Evalue 4.10e-113

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Taxonomy

Corallococcus coralloides → Corallococcus → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 903
ATGGTCGATCATCTCTCCGGCCTCGCCATCTTCGTCGAGACCGTGCAGGCGGGCGGGTTTTCGGCCGCGGCGGTGCGGCTGAACCTGTCGCGGTCCGCCGTGGGCAAGACCGTGGCGCGGCTGGAGCGGCGGCTCGGCGCGCGCCTGTTCCACCGCACCACGCGCAGCCAGGCGCTCACCGAGGACGGCCAGGCCTTCTACGAACGCTGCCTCCGGGCGCTGGCCGAGATCCGCAGCGGCGAGGCCATGCTCGAATCCGGCAAGCGCGAGGTCGTCGGCCGGCTGCGCGTCTCCATGCCGGTGCTGTTCGGCCGCCGCTGCGTCGCCCCGATCCTGACCGGGCTCGCGCGCCTGCATCCCGGGCTCGAGCTCGACCTCAACTTCAGCGATCGCTTGGTCGACCTGATGGAGGACGGCTTCGACCTCGCCATCCGCAACGGCGGCACCGGCGACGGCGTCGGCCTGATGACCCGGCGGATCGGCAGCCAGCGCATGACCGTCTGCGCCGCGCCGGCCTATCTCGCCGAGCACGGCACGCCCCGCGGCATCGCCGATCTCGGGCGGCACGAGGCTGTGGTCTATGGCCGGCCCGGCCTGGTCAAGTCCTGGCTCTTTCCCGCCGACGGTGCGCCGCCCGTCGCATTCCAGCCGCGCAGCCGCCTGCGCTTCGACGATCTCGACGCCATCGCCGACGCGGCCGCCGCCGGGGCCGGCCTCGCCTGGCTGCCCTGCTGGCTGATCCGCGAGCATGTGCGGGCCGGCAGCCTGGTGCGGGTCCTGGCCGACCATCCCGGCCTCGTCTTCGACATCCACGCCGTCTGGCCGCAGACCCCGCATCTGCCGCTGCGCGTGCGCCTCGCCATCGACCGGCTGGCCGAGGCCCTGCCGGATCCGCTGAGCTGA
PROTEIN sequence
Length: 301
MVDHLSGLAIFVETVQAGGFSAAAVRLNLSRSAVGKTVARLERRLGARLFHRTTRSQALTEDGQAFYERCLRALAEIRSGEAMLESGKREVVGRLRVSMPVLFGRRCVAPILTGLARLHPGLELDLNFSDRLVDLMEDGFDLAIRNGGTGDGVGLMTRRIGSQRMTVCAAPAYLAEHGTPRGIADLGRHEAVVYGRPGLVKSWLFPADGAPPVAFQPRSRLRFDDLDAIADAAAAGAGLAWLPCWLIREHVRAGSLVRVLADHPGLVFDIHAVWPQTPHLPLRVRLAIDRLAEALPDPLS*