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berkeley_reactor_200306_biofilm_scaffold_48742

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Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_48742_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(170..1096)
DNA (927bp) protein (309aa)
UPI0003D050BC related cluster n=1 Tax=unknown RepID=UPI0003D050BC
Transcriptional regulator {ECO:0000313|EMBL:ESZ18285.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator with sigma factor-related N-terminal domain
berkeley_reactor_200306_biofilm_scaffold_48742_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1297..2070)
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XSN9_RHIRD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDN94914.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
berkeley_reactor_200306_biofilm_scaffold_48742_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2173..2964)
DNA (792bp) protein (264aa)
N-acyl homoserine lactonase AttM {ECO:0000250|UniProtKB:Q8VPD5}; Short=AHL-lactonase AttM {ECO:0000250|UniProtKB:Q8VPD5};; EC=3.1.1.81;; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
N-acyl homoserine lactonase AttM n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=AHLLM_AZOC5
Zn-dependent hydrolase
berkeley_reactor_200306_biofilm_scaffold_48742_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2999..4285)
DNA (1287bp) protein (429aa)
putative iron-containing alcohol dehydrogenase (EC:1.1.1.-)
Iron-containing alcohol dehydrogenase n=1 Tax=Acidiphilium sp. PM RepID=F7S663_9PROT
Alcohol dehydrogenase {ECO:0000313|EMBL:KGM36085.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_48742_5
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4404..5867
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E9231
D-lactate dehydrogenase/oxidoreductase {ECO:0000313|EMBL:GAN78645.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
putative oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_48742_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5854..6639
DNA (786bp) protein (262aa)
GntR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBG3_9PROT
GntR family transcriptional regulator {ECO:0000313|EMBL:EZQ13553.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_48742_7
bacterium YEK0313, Bacteria

Not on your lists

comp(6648..7433)
DNA (786bp) protein (262aa)
Putative DNA-binding protein n=1 Tax=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) RepID=F2MZ37_PSEU6
Uncharacterized protein {ECO:0000313|EMBL:CEJ16118.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative DNA-binding protein
berkeley_reactor_200306_biofilm_scaffold_48742_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7541..8731
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDW3_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA19236.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_48742_9
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9018..10055
DNA (1038bp) protein (346aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Homoserine O-succinyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMA4_9PROT
metA; Homoserine O-succinyltransferase
berkeley_reactor_200306_biofilm_scaffold_48742_10
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9974..10993)
DNA (1020bp) protein (340aa)
alcohol dehydrogenase n=1 Tax=Serratia marcescens RepID=UPI0002D6F8FF
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:KEA05369.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_48742_11
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11100..12002
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MPU0_CORCM
yhjC2; LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AFE11013.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
berkeley_reactor_200306_biofilm_scaffold_48742_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12073..14049)
DNA (1977bp) protein (659aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000375D4F8
Uncharacterized protein {ECO:0000313|EMBL:EJC78262.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48742_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14525..15574)
DNA (1050bp) protein (350aa)
Sugar binding protein of sugar ABC transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDT0_PELHB
Sugar binding protein of sugar ABC transporter {ECO:0000313|EMBL:CDX35858.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar binding protein of sugar ABC transporter
berkeley_reactor_200306_biofilm_scaffold_48742_14
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15571..16974)
DNA (1404bp) protein (468aa)
UPI0003CEBEA9 related cluster n=1 Tax=unknown RepID=UPI0003CEBEA9
ROK family transcriptional regulator {ECO:0000313|EMBL:ESY71784.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
transcriptional regulator/sugar kinase
berkeley_reactor_200306_biofilm_scaffold_48742_15
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17227..17907
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000365CE7C
Uncharacterized protein {ECO:0000313|EMBL:ERK72123.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48742_16
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17897..19570
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003797BFF
Gluconate dehydrogenase {ECO:0000313|EMBL:ESW60328.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
glucose-methanol-choline oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_48742_17
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19567..20400
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000379B402
Inosose dehydratase {ECO:0000313|EMBL:GAD57259.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
xylose isomerase
berkeley_reactor_200306_biofilm_scaffold_48742_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20445..21563
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036C8DBB
Sugar ABC transporter periplasmic protein {ECO:0000313|EMBL:CDX14104.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_48742_19
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21638..23221
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003650397
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD57262.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
sugar ABC transporter, ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_48742_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23221..24186
DNA (966bp) protein (322aa)
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000375BC0E
Putative sugar transporter subunit: membrane component of ABC superfamily {ECO:0000313|EMBL:CDX35840.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter, permease protein
berkeley_reactor_200306_biofilm_scaffold_48742_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24193..24906)
DNA (714bp) protein (238aa)
Putative exported protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8YYS6_XANCT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX12358.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
berkeley_reactor_200306_biofilm_scaffold_48742_22
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25122..25601)
DNA (480bp) protein (160aa)
Putative integral membrane protein n=1 Tax=Caulobacter sp. AP07 RepID=J3AS10_9CAUL
Putative integral membrane protein {ECO:0000313|EMBL:EJL36209.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
integral membrane protein-like protein
berkeley_reactor_200306_biofilm_scaffold_48742_23
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25594..26439)
DNA (846bp) protein (282aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Pseudomonas sp. GM50 RepID=J2SKP1_9PSED
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EJM62369.1}; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
putative nucleoside-diphosphate sugar epimerase
berkeley_reactor_200306_biofilm_scaffold_48742_24
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26521..27174
DNA (654bp) protein (218aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2P0K9_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:EJL20442.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_48742_25
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27211..28323)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGD2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC51024.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48742_26
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28439..29383)
DNA (945bp) protein (315aa)
UPI0003CF0FBF related cluster n=1 Tax=unknown RepID=UPI0003CF0FBF
ABC transporter permease {ECO:0000313|EMBL:ESW82070.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_48742_27
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29380..30438)
DNA (1059bp) protein (353aa)
Sugar ABC transporter, permease protein RbsC-1 n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98EM8_RHILO
sugar ABC transporter permease, rbsC-1
Sugar ABC transporter, permease protein RbsC-1 {ECO:0000313|EMBL:BAB50890.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_48742_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30435..31955)
DNA (1521bp) protein (507aa)
UPI0003CEF0FC related cluster n=1 Tax=unknown RepID=UPI0003CEF0FC
Uncharacterized ABC transporter ATP-binding protein YufO {ECO:0000313|EMBL:CDX23061.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_48742_29
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32087..33109)
DNA (1023bp) protein (341aa)
UPI0003CE20B9 related cluster n=1 Tax=unknown RepID=UPI0003CE20B9
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY18049.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_48742_30
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33546..35990
DNA (2445bp) protein (815aa)
Penicillin-binding protein 1A n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IFK5_AZOC5
penicillin-binding protein 1A
Penicillin-binding protein 1A {ECO:0000313|EMBL:BAF89623.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Displaying items 1-30 of 69 in total

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