ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_41009_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 26436..27398

Top 3 Functional Annotations

Value Algorithm Source
putrescine/spermidine ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003160B1A similarity UNIREF
DB: UNIREF100
  • Identity: 69.5
  • Coverage: 305.0
  • Bit_score: 421
  • Evalue 4.30e-115
Spermidine/putrescine ABC transporter, permease component I protein {ECO:0000313|EMBL:EGE59143.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.5
  • Coverage: 305.0
  • Bit_score: 419
  • Evalue 2.30e-114
potH; spermidine/putrescine ABC transporter permease I protein similarity KEGG
DB: KEGG
  • Identity: 68.2
  • Coverage: 305.0
  • Bit_score: 418
  • Evalue 1.00e-114

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium etli → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 963
ATGGCCGCCGCAAGCCGCAAGGGCTTCTTCTCCGGGCGGACCGCCGTCATCGCGGTGCCCTATCTCTGGCTGGCGATCTTCTTCATCCTGCCCTTCGTGCTGGTCCTGAAGATCTCCCTGTCGGAGACCGACATCGCCATCCCGCCCTACACGCCGACCTTCCCGCTCGGCGAGACCTGGGAGGCGATCAAGGGCTTCGACTTCGGCGCAGCCTGGGCCGCCGTCTCCGACTACCTCTCCCAGCTCAGCTTCGACAACTTCACGCTGCTGACGCAGGACGCGCTCTACTGGAAGGCCTATCTCTCCAGCCTGTGGATCGCGGCGGTGTCGACGGTGCTGCTGCTGCTGGTGGGATACCCCATCGCCTACGGCATGGCGCGCGCGCCCAGGACGCTGCGCCCGACGCTCCTGATGCTGGTGATCCTGCCGTTCTGGACCTCGTTCCTGATCCGCGTCTATGCCTGGATCGGCATCCTCAAGCCGGAAGGCCTGCTCAACCTGGCGCTGGCCAAGATCGGCCTGGTCGACATGGCCAATCCGCTGCAGATCCTCAACACCGACATCGCCATCTATATCGGCATCGTCTATTCTTATCTGCCCTTCATGGTGCTGCCGCTCTATTCGGCGCTGGAGAAGATGGACGAGACGCTGCTGGAGGCAGCGGCGGACCTCGGCTGCAGGCCGGTCAAGGCCTTCTGGCTCGTCACCTTCCCGCTGTCGCTGCCGGGCGTGGTCGCCGGCTGCATGCTGTGCTTCATTCCCGCCGTGGGCGAATTCGTCATCCCCGACCTGCTCGGCGGCTCCTCGACGCTGATGATCGGCAAGACCTTGTGGGACGTGTTCAACCTCAACCGCGACTGGCCGGCAGCCTCGGCCGTGGCGGTGGTGCTGCTGGTTCTCCTGGTGGTGCCGATCGTGTTCTACCAGCACGTCCAGACCAAGCAGCTGGAGGCCGGCCGATGA
PROTEIN sequence
Length: 321
MAAASRKGFFSGRTAVIAVPYLWLAIFFILPFVLVLKISLSETDIAIPPYTPTFPLGETWEAIKGFDFGAAWAAVSDYLSQLSFDNFTLLTQDALYWKAYLSSLWIAAVSTVLLLLVGYPIAYGMARAPRTLRPTLLMLVILPFWTSFLIRVYAWIGILKPEGLLNLALAKIGLVDMANPLQILNTDIAIYIGIVYSYLPFMVLPLYSALEKMDETLLEAAADLGCRPVKAFWLVTFPLSLPGVVAGCMLCFIPAVGEFVIPDLLGGSSTLMIGKTLWDVFNLNRDWPAASAVAVVLLVLLVVPIVFYQHVQTKQLEAGR*