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berkeley_reactor_200306_biofilm_scaffold_41009

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_41009_1
unknown

Not on your lists

1..258
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036961D1
berkeley_reactor_200306_biofilm_scaffold_41009_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

398..781
DNA (384bp) protein (128aa)
Response regulator receiver protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4T5_STAND
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADH87983.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_41009_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(940..2016)
DNA (1077bp) protein (359aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG68_PHEZH
ribosome-associated GTPase
berkeley_reactor_200306_biofilm_scaffold_41009_4
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2289..3311
DNA (1023bp) protein (341aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBX0_MESCW
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADV12045.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
berkeley_reactor_200306_biofilm_scaffold_41009_5
RHI_Legionellales_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3445..4491
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI000373239D
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Legionellales_37_14_curated
berkeley_reactor_200306_biofilm_scaffold_41009_6
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4482..6038
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI00035CE3AB
Coenzyme F390 synthetase
Coenzyme F390 synthetase {ECO:0000313|EMBL:ACQ81762.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
berkeley_reactor_200306_biofilm_scaffold_41009_7
unknown

Not on your lists

comp(6318..7274)
DNA (957bp) protein (319aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_41009_8
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7365..9509)
DNA (2145bp) protein (715aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000365D0E3
PAS sensor protein {ECO:0000313|EMBL:KFB09357.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
multi-sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_41009_9
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9491..10099)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00038088E0
Heme oxygenase {ECO:0000313|EMBL:KFB09356.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
heme oxygenase
berkeley_reactor_200306_biofilm_scaffold_41009_10
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10157..12460)
DNA (2304bp) protein (768aa)
RNA-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F67F19
RNA-binding protein {ECO:0000313|EMBL:ESY67652.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
Tex-like protein
berkeley_reactor_200306_biofilm_scaffold_41009_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12564..14297)
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LWD3_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB75568.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_41009_12
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14469..15170)
DNA (702bp) protein (234aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0P7_9RHIZ
putative short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EHS53784.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
berkeley_reactor_200306_biofilm_scaffold_41009_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15358..16248
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037657FB
LysR family transcriptional regulator {ECO:0000313|EMBL:EHH03246.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_41009_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16305..16928
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030A1A62
Maf-like protein FG93_05357 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Maf-like protein
berkeley_reactor_200306_biofilm_scaffold_41009_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16928..17140
DNA (213bp) protein (71aa)
DNA gyrase inhibitor YacG n=1 Tax=Nitratireductor indicus C115 RepID=K2NN87_9RHIZ
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
zinc-binding protein
berkeley_reactor_200306_biofilm_scaffold_41009_16
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17143..18210
DNA (1068bp) protein (356aa)
Putative malate dehydrogenase n=1 Tax=Rhizobium sp. RepID=L0NLM1_RHISP
Putative malate dehydrogenase {ECO:0000313|EMBL:CCF21671.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_41009_17
unknown

Not on your lists

comp(18302..18883)
DNA (582bp) protein (194aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_41009_18
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18993..20279)
DNA (1287bp) protein (429aa)
FAD dependent oxidoreductase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A250_STAND
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADH87666.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_41009_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20587..21171
DNA (585bp) protein (195aa)
Carbonic anhydrase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWZ8_METTR
Carbonic anhydrase {ECO:0000313|EMBL:KJC59940.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
carbonic anhydrase
berkeley_reactor_200306_biofilm_scaffold_41009_20
unknown

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21387..22319
DNA (933bp) protein (311aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_41009_21
unknown

Not on your lists

22390..22656
DNA (267bp) protein (89aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_41009_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22569..23972)
DNA (1404bp) protein (468aa)
Glutamate--putrescine ligase {ECO:0000313|EMBL:ABS67183.1}; EC=6.3.1.11 {ECO:0000313|EMBL:ABS67183.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Glutamate--putrescine ligase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGP0_XANP2
glutamate--putrescine ligase
berkeley_reactor_200306_biofilm_scaffold_41009_23
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24333..24965)
DNA (633bp) protein (211aa)
ThiJ/PfpI family protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMN0_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AKF87243.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
ThiJ/PfpI family protein
berkeley_reactor_200306_biofilm_scaffold_41009_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25235..26428
DNA (1194bp) protein (398aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A253_STAND
spermidine/putrescine ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_41009_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26436..27398
DNA (963bp) protein (321aa)
putrescine/spermidine ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003160B1A
Spermidine/putrescine ABC transporter, permease component I protein {ECO:0000313|EMBL:EGE59143.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
potH; spermidine/putrescine ABC transporter permease I protein
berkeley_reactor_200306_biofilm_scaffold_41009_26
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27395..28213
DNA (819bp) protein (273aa)
putrescine/spermidine ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI000379CA65
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:ESR23693.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ornithine carbamoyltransferase
berkeley_reactor_200306_biofilm_scaffold_41009_27
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28215..30092)
DNA (1878bp) protein (626aa)
AsmA n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAT0_9RHOB
AsmA {ECO:0000313|EMBL:EJW10211.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
outer membrane protein assembly protein AsmA
berkeley_reactor_200306_biofilm_scaffold_41009_28
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30309..32276
DNA (1968bp) protein (656aa)
acetoacetyl-CoA synthetase n=1 Tax=Xanthobacteraceae RepID=UPI000382F003
acetoacetyl-CoA synthetase
Acetoacetyl-CoA synthetase {ECO:0000313|EMBL:BAF88241.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_41009_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32433..32798
DNA (366bp) protein (122aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=D4Z8N7_SPHJU
hypothetical protein
Phage-related protein {ECO:0000313|EMBL:KEZ11972.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
berkeley_reactor_200306_biofilm_scaffold_41009_30
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32795..33118
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002F733F5
helix-turn-helix domain containing XRE family transcriptional regulator
Helix-turn-helix domain containing XRE family transcriptional regulator {ECO:0000313|EMBL:CCJ07157.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
Displaying items 1-30 of 86 in total

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