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berkeley_reactor_200306_biofilm_scaffold_55848_5

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 4132..5544

Top 3 Functional Annotations

Value Algorithm Source
Site-specific recombinase XerD n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMP5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 65.5
  • Coverage: 452.0
  • Bit_score: 587
  • Evalue 1.10e-164
Site-specific recombinase XerD {ECO:0000313|EMBL:EIM25237.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.5
  • Coverage: 452.0
  • Bit_score: 587
  • Evalue 1.60e-164
integrase family protein similarity KEGG
DB: KEGG
  • Identity: 62.2
  • Coverage: 458.0
  • Bit_score: 554
  • Evalue 1.80e-155

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Taxonomy

Microvirga lotononidis → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1413
ATGAAGGGTACGTACCGGGGTACGCAGGGGGTGTCTGAGATGGCAAGGCCGGCCGCTGCCGACACGCGATATCTGGAACAGAAGAATGGGAAGTGGCGGGTAACGCTCGCCGTCCCTCGCGAGCTTCAGGGCAAACTCGGGACCCGTCTCAAGCGCCCGCTGCACACCGACAGCCTCGCGGTCGCCAACCGGATCAAGTGGCAGGCGCTGGCGGAGCTGCGGGCGGTCATCGAGCATGCCCGCAACGTGACGGGCAAGGGCGCCATCATCCGGGAGGCCATCGAGCTGGCGGCGTATCGCTCACGAGCACGGGACCCCGAGGAGATTGCGAACCTAGACGACGCCATTGTGGATCGAGCGATCGAGCTTCAGGGACCTGTCGTAGGCTCTGAGGAGGACGTGGACGGCGGCCCGGTGCCGATCTTCGATCCCGAGAAGGAGCGGGCGGCCTTAGAGTTCGCAGAGGTCGCCCAGGGCCGAGCAACGCCCATCGCCCTCTACCATCCCGACTACCTCAACCAGTCGATCAACAAGCGCCGCACTAAGGCCGACGATGAGCGGTCCTTGCGGTTCCTCCTGGCGTGGTGCGAGCGGGAGCGGGTGCGGCCCACGTTGCAGGCGATAACCCGTAAGGTGGCGGCCCGCTTCATGGATGATCTGGGCGGGGTTGCCGGCGGGCAGAGCCCGGTGACCCTTCAGAAGTACGTGTCCCGCCTCTCTCGCTTCTGGCAATGGCTCGCGAAGCGTGACCACGTCGAGAGCAACCCATGGGCGGGCCTCAGGGTCGAGGCGAAGCCAACCCCGCATGACGAGCTAGAGCGGCCCTTCACGGATGCCGAGATGCTCGCCCTCCTCAACGGCGCCGCGTCCCCCGAGATGCACGACCTTATGCGCATAGCGGCCCTCTCGGGGGCACGCTTGGATGTCATCGTGGACCTCAGGGTCAAGGACTGCGCGGGCGGCATGTTCGTCTTCAAGCCGCAGAAGAAGGAGACCGCGCCGCGGCAAGTCCCGATCCACTCGGAACTCGCGGCGATCATCAAGAGGCGGGCCAAGGGGAAGGCCGCAGATGACGCCATGTTCCCAGAGTGGCCGGCCCCGAGAAAGGTGGGGTCCCAGCGTGAGCGGTCCTTCAAGGCGTCCAACGCCTTCACAGCGTATCGCCGGCAAGTGGGCGTTGATGATGTGGTGCCAGGTAAGCGCCGCTCCCTCGTCAACTTCCACTCGTTCCGGCGCTGGTTCATCACCAAGGCGGAGCAGGCGGACCAGGCTGAGGGGATCATAGCGGCCGTGGTGGGCCACAAGAGGAAGGGGATGACCCTGGGCAGATATTCGGCGGGGCCGCTGCTGGAACAGGCTAGGCGGTGTGTAGAAGCTGTGAGGTTGCCGCGGCAGCCTAGTGCCAAAGAATAG
PROTEIN sequence
Length: 471
MKGTYRGTQGVSEMARPAAADTRYLEQKNGKWRVTLAVPRELQGKLGTRLKRPLHTDSLAVANRIKWQALAELRAVIEHARNVTGKGAIIREAIELAAYRSRARDPEEIANLDDAIVDRAIELQGPVVGSEEDVDGGPVPIFDPEKERAALEFAEVAQGRATPIALYHPDYLNQSINKRRTKADDERSLRFLLAWCERERVRPTLQAITRKVAARFMDDLGGVAGGQSPVTLQKYVSRLSRFWQWLAKRDHVESNPWAGLRVEAKPTPHDELERPFTDAEMLALLNGAASPEMHDLMRIAALSGARLDVIVDLRVKDCAGGMFVFKPQKKETAPRQVPIHSELAAIIKRRAKGKAADDAMFPEWPAPRKVGSQRERSFKASNAFTAYRRQVGVDDVVPGKRRSLVNFHSFRRWFITKAEQADQAEGIIAAVVGHKRKGMTLGRYSAGPLLEQARRCVEAVRLPRQPSAKE*