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berkeley_reactor_200306_biofilm_scaffold_55848

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_55848_1
Stegodyphus mimosarum, Stegodyphus, Araneae, Arachnida, Arthropoda, Metazoa

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2..859
DNA (858bp) protein (286aa)
Serine/arginine repetitive matrix protein 1 {ECO:0000313|EMBL:KFM75376.1}; Flags: Fragment;; TaxID=407821 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Eresoidea; Eresidae; Stegodyphus.;" source="Stegodyphus mimosarum.;"
berkeley_reactor_200306_biofilm_scaffold_55848_2
unknown

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853..2079
DNA (1227bp) protein (409aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_3
unknown

Not on your lists

comp(2006..2632)
DNA (627bp) protein (209aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2769..3791
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCI3_AFIFE
NAD-dependent epimerase/dehydratase
Uncharacterized protein {ECO:0000313|EMBL:EKS28272.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
berkeley_reactor_200306_biofilm_scaffold_55848_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4132..5544
DNA (1413bp) protein (471aa)
Site-specific recombinase XerD n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMP5_9RHIZ
Site-specific recombinase XerD {ECO:0000313|EMBL:EIM25237.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
integrase family protein
berkeley_reactor_200306_biofilm_scaffold_55848_6
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5897..7051
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI0003661745
Uncharacterized protein {ECO:0000313|EMBL:ESZ12408.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
berkeley_reactor_200306_biofilm_scaffold_55848_7

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7283..7795
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DIP1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN70374.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_8
unknown

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comp(7904..8605)
DNA (702bp) protein (234aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_9
unknown

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comp(8702..8992)
DNA (291bp) protein (97aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_10
unknown

Not on your lists

comp(8983..10332)
DNA (1350bp) protein (450aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_11
unknown

Not on your lists

comp(10344..10712)
DNA (369bp) protein (123aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_12
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10877..15202)
DNA (4326bp) protein (1442aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003700567
Uncharacterized protein {ECO:0000313|EMBL:EGL65599.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_13
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15609..16979)
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000362ABD2
Uncharacterized protein {ECO:0000313|EMBL:AID32445.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
Hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16981..17763)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003621A13
Uncharacterized protein {ECO:0000313|EMBL:KFC75621.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_15
unknown

Not on your lists

comp(17757..18308)
DNA (552bp) protein (184aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_16
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18538..19182)
DNA (645bp) protein (215aa)
UPI0003CEB247 related cluster n=1 Tax=unknown RepID=UPI0003CEB247
Recombinase {ECO:0000313|EMBL:ESX85295.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
Resolvase domain protein
berkeley_reactor_200306_biofilm_scaffold_55848_17
unknown

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comp(19392..19673)
DNA (282bp) protein (94aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_18
unknown

Not on your lists

comp(19679..19906)
DNA (228bp) protein (76aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_19
unknown

Not on your lists

comp(20001..20225)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_20
unknown

Not on your lists

comp(20225..20521)
DNA (297bp) protein (99aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_21
unknown

Not on your lists

comp(20521..20763)
DNA (243bp) protein (81aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_22
unknown

Not on your lists

comp(20763..20927)
DNA (165bp) protein (55aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_23
unknown

Not on your lists

comp(20932..21141)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_24
unknown

Not on your lists

comp(21146..21271)
DNA (126bp) protein (42aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_25
unknown

Not on your lists

comp(21275..21496)
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_26
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22106..23272)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SU55_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD97732.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_27
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23351..23557
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TT46_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE09634.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_55848_28
unknown

Not on your lists

23625..23822
DNA (198bp) protein (66aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_55848_trna_1
unknown

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comp(23930..24002)
DNA (73bp)
transferRNA Ala
berkeley_reactor_200306_biofilm_scaffold_55848_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24116..25093
DNA (978bp) protein (326aa)
Cobalamin biosynthesis protein CobD n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMU4_AZOBR
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cobD; cobalamin biosynthetic protein
Displaying items 1-30 of 118 in total

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