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berkeley_reactor_200306_biofilm_scaffold_56669_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(2..2083)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.6
  • Coverage: 689.0
  • Bit_score: 943
  • Evalue 1.30e-271
transcription-repair coupling factor n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D4ADB3 similarity UNIREF
DB: UNIREF100
  • Identity: 70.6
  • Coverage: 691.0
  • Bit_score: 978
  • Evalue 3.40e-282
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 65.8
  • Coverage: 688.0
  • Bit_score: 924
  • Evalue 1.30e-266

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Taxonomy

Microvirga aerilata → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2082
ATGACGTCGCTCGACCATCGCAAGCTCGCGGACCATCTGGCCCAGGGCGGGCAGGCGACCTTCGCCGCCTGTCCGGACGGGCTCGACGCCCTGGTTCTCGCCGACCTCGCCCGGGCCCTGGCGCCGAGGACGCGCGAGCGCCACGCTGCCCTGCTGCACATCGCCCGCGACGGCGGCCGTGCCGCGGCCCTGGAGGCGGCGCTGCGCTTCTTCGCGCCCGAGATCGAGGTGCTGAGCGTCCCGGCCTGGGACTGCCAGCCCTATGATCGCGTCTCGCCCAACGCCGCCGTCGTCGCCCGGCGCATGACGACGCTGGCGCGCCTCGCCACCACCCGCGGCGGCGACACGCCGCGCATCGTGCTGACCACGGTCAACGCCGCGCTGCAGCGCCTGCCGCCACGCGAGCTCGTCGCCTCGCAGTCGCTCTCGGCGGCGCCGGGCAATGCCGTCAACATGGATGCGCTGGCGCTCTGGCTGGAGCACAACGGCTATATCAGAACCTCGACCGTGCGCGAGACCGGCGAATACGCCGTGCGCGGCGGCATCCTCGACCTCTATCCCCCCGGCCTCGGCCAGCCGGTCCGGCTCGATTTCTTCGGAGATACGCTGGAATCGATCCGCGCCTTCGACGCCGAGACCCAGCGCACCTCGGCGCAGCTGCGCGTGCTCGACCTGGTGCCGATGAGCGAGGTGCAGCTCACCACAGAGACGATCAAGCGCTTCCGCCAGGCCTATCTCGGCGAGTTCGGCGCCCAGACGCGCGGCGACCCGCTCTACGAGGCGATCTCGGAAGGGCGGCGCTATCCCGGCTTCGAGCACTGGTTGCCGCTGTTCCACAGCCGGCTCGACACGCTGCTCGACTATCTCGACGGCGTGCCGGTGGCGCTGGACGCCCTGGCCGAGGACGCGGCCGGCGAGCGCCTCGCCCAGATCAAAGATTATTATGACGCGCGGCACGAGGGCATCGGCAAGAGCGGCGAGGCCGTGCCCTACAAGCCGCTCCCGCCCGACAGGCTCTATCTCGGCCCGCAGGAATGGCGCCGACGGCTCGACGAAGCCCCGCTCGCCCGCTTCACGCCCTTCGCGACACCGGAAACGGCCGGCCGCGTGATCGTCGATTGCGGCGGCCGCCAGGGCCGCACCTTCGCGGCCGAACGCGCCGCGGACGAGGGCAATGTCTTCGACGCGGTGGTGCGCCACGTGCGCGAGCGGCAGGCGGCAGGCCGGCGCGTCATCGTCGCCGGCTGGACCGACGGCTCGCGCGAGCGGCTCGGGGCGGTGCTGGCCGACCACGGTCTGACGCAACTGAAGCCGGTGCCGGACTTCGCCCGCGCCATGGCGCTGCCGAAGAGCGAGGCGGCGCTGGCGGTGCTGCCGCTCGAGACCGGCTTCGAGACCGACGAGATCGCCGTGGTCGCCGAGCAGGACGTCCTGGGCGACCGGCTGGTGCGCCGGCCGACCAAGCGCAAGCGCGCCCAGGATTTCCTCACCGAGCTGACGACGCTGTCCCCGGGCGATGCCGTCGTCCATGTCGACCACGGCATCGGCCGCTTCGTCGGCCTGCAGACGGTGACGGCAGCCGGCGCGCCGCATGCCTGCCTGGAGATCCACTACGCCGGTGGCGACAAGCTGTTCCTGCCGGTGGAGAACCTCGAGCTCCTGTCGCGCTACGGCTCGGAGGATGCCGAGGCGCCGCTCGACAAGCTCGGCGGCCGCGGCTGGCAGGAGCGCAAGGCCCGGATGCGCAAGCGCATCCGCGAGATGGCCGGCGAGCTGATCCAGGTGGCGGCGGCGCGCGCCCTGCGCGAAGCACCGAAGCTGGTGCCGGCGCAAGGACTCTACGACGAGTTCTGCGCCCGCTTCCCCTATGACGAGACCGAGGACCAGCAGACCGCCATCGACGCGGTGCTGGACGATCTCGGCGCCGGCCGGCCGATGGACCGGCTGGTCTGCGGCGATGTCGGCTTCGGCAAGACCGAGGTGGCCCTGCGCGCCGCCTTCGCGGCCGCCCTCTCCGGCCGCCAGGTCGCGGTCGTGGTGCCGACCACGCTGCTCGCCCGCCAGCACTACAAGACCTTCGCC
PROTEIN sequence
Length: 694
MTSLDHRKLADHLAQGGQATFAACPDGLDALVLADLARALAPRTRERHAALLHIARDGGRAAALEAALRFFAPEIEVLSVPAWDCQPYDRVSPNAAVVARRMTTLARLATTRGGDTPRIVLTTVNAALQRLPPRELVASQSLSAAPGNAVNMDALALWLEHNGYIRTSTVRETGEYAVRGGILDLYPPGLGQPVRLDFFGDTLESIRAFDAETQRTSAQLRVLDLVPMSEVQLTTETIKRFRQAYLGEFGAQTRGDPLYEAISEGRRYPGFEHWLPLFHSRLDTLLDYLDGVPVALDALAEDAAGERLAQIKDYYDARHEGIGKSGEAVPYKPLPPDRLYLGPQEWRRRLDEAPLARFTPFATPETAGRVIVDCGGRQGRTFAAERAADEGNVFDAVVRHVRERQAAGRRVIVAGWTDGSRERLGAVLADHGLTQLKPVPDFARAMALPKSEAALAVLPLETGFETDEIAVVAEQDVLGDRLVRRPTKRKRAQDFLTELTTLSPGDAVVHVDHGIGRFVGLQTVTAAGAPHACLEIHYAGGDKLFLPVENLELLSRYGSEDAEAPLDKLGGRGWQERKARMRKRIREMAGELIQVAAARALREAPKLVPAQGLYDEFCARFPYDETEDQQTAIDAVLDDLGAGRPMDRLVCGDVGFGKTEVALRAAFAAALSGRQVAVVVPTTLLARQHYKTFA