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berkeley_reactor_200306_biofilm_scaffold_56669

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_56669_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2083)
DNA (2082bp) protein (694aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
transcription-repair coupling factor n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D4ADB3
transcription-repair coupling factor
berkeley_reactor_200306_biofilm_scaffold_56669_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2080..2376)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000381D6DE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS42181.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
berkeley_reactor_200306_biofilm_scaffold_56669_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2514..4613
DNA (2100bp) protein (700aa)
ATP-dependent DNA helicase RecG n=1 Tax=Rhodovulum sp. PH10 RepID=J6UEW6_9RHOB
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EJW11689.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
DEAD/DEAH box helicase
berkeley_reactor_200306_biofilm_scaffold_56669_4
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4617..5366)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZIS8_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB82767.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_56669_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5427..7250)
DNA (1824bp) protein (608aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6M7_9BRAD
berkeley_reactor_200306_biofilm_scaffold_56669_6
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7369..7980)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003789F8D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIG56167.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
berkeley_reactor_200306_biofilm_scaffold_56669_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8265..9638)
DNA (1374bp) protein (458aa)
Type I secretion outer membrane protein, TolC family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ID98_METNO
Channel protein TolC {ECO:0000313|EMBL:KFG68348.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
TolC family type I secretion outer membrane protein
berkeley_reactor_200306_biofilm_scaffold_56669_8
bacterium YEK0313, Bacteria

Not on your lists

comp(9798..10454)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E09BE
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CEJ13396.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
methyltransferase transmembrane protein
berkeley_reactor_200306_biofilm_scaffold_56669_trna_1
unknown

Not on your lists

10637..10707
DNA (71bp)
transferRNA Cys
berkeley_reactor_200306_biofilm_scaffold_56669_9
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11182..12150)
DNA (969bp) protein (323aa)
Peptide chain release factor 2 n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NTB5_9RHOB
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
prfB; peptide chain release factor 2
berkeley_reactor_200306_biofilm_scaffold_56669_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12415..14865)
DNA (2451bp) protein (817aa)
penicillin-binding protein 1A (EC:2.4.1.129)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036A6316
Penicillin-binding protein {ECO:0000313|EMBL:KIZ38826.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
berkeley_reactor_200306_biofilm_scaffold_56669_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15153..16415)
DNA (1263bp) protein (421aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ABD88401.1}; EC=3.5.1.28 {ECO:0000313|EMBL:ABD88401.1};; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000365791C
berkeley_reactor_200306_biofilm_scaffold_56669_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17088..19769
DNA (2682bp) protein (894aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Ribonuclease E n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8G9_STAND
ribonuclease, Rne/Rng family
berkeley_reactor_200306_biofilm_scaffold_56669_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19908..20531
DNA (624bp) protein (208aa)
(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IMS8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC62267.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
TPR repeat-containing protein
berkeley_reactor_200306_biofilm_scaffold_56669_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20573..21340
DNA (768bp) protein (256aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000301A8A6
berkeley_reactor_200306_biofilm_scaffold_56669_15
unknown

Not on your lists

21382..21936
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000361F67C
berkeley_reactor_200306_biofilm_scaffold_56669_16
bacterium YEK0313, Bacteria

Not on your lists

21986..22792
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF431C
2,3-dehydroadipyl-CoA hydratase {ECO:0000313|EMBL:CEJ13545.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative enoyl-CoA hydratase
berkeley_reactor_200306_biofilm_scaffold_56669_17
bacterium YEK0313, Bacteria

Not on your lists

22792..23328
DNA (537bp) protein (179aa)
CoA-binding domain protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAM7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ13546.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
CoA-binding protein
berkeley_reactor_200306_biofilm_scaffold_56669_18
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23417..24703
DNA (1287bp) protein (429aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ACA17074.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ACA17074.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Amorphus coralli RepID=UPI0003676515
O-acetylhomoserine aminocarboxypropyltransferase
berkeley_reactor_200306_biofilm_scaffold_56669_19
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24714..25931)
DNA (1218bp) protein (406aa)
Major facilitator superfamily MFS_1 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IG00_BEII9
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB95739.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_56669_20
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26237..27220)
DNA (984bp) protein (328aa)
Alcohol dehydrogenase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0C1_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:EMS43293.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
alcohol dehydrogenase zinc-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_56669_21
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27208..27870)
DNA (663bp) protein (221aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FTM8_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:ESX83149.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_56669_22
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27987..29198
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00037258F0
Major Facilitator Superfamily protein {ECO:0000313|EMBL:KGC20335.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56669_23
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29298..30713
DNA (1416bp) protein (472aa)
UPI0003CFFD40 related cluster n=1 Tax=unknown RepID=UPI0003CFFD40
MFS transporter {ECO:0000313|EMBL:ESZ29872.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
transport protein
berkeley_reactor_200306_biofilm_scaffold_56669_24
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30760..31869)
DNA (1110bp) protein (370aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
Heme A synthase n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YMJ9_MOBAS
cytochrome oxidase assembly
berkeley_reactor_200306_biofilm_scaffold_56669_25
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31971..32183
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH43_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB94457.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_56669_26
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32371..33036
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JDX7_AGRRK
hypothetical protein
Putative periplasmic protein {ECO:0000313|EMBL:EJK87171.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_56669_27
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33077..33400)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DVF2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJK87172.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56669_28
Bacillus methylotrophicus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33635..34216
DNA (582bp) protein (194aa)
sporulation protein YtaF n=1 Tax=Brevibacillus sp. phR RepID=UPI000302BA3C
hypothetical protein
Manganese efflux pump MntP {ECO:0000313|EMBL:AIU82419.1}; TaxID=492670 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus methylotrophicus.;"
berkeley_reactor_200306_biofilm_scaffold_56669_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34221..35093)
DNA (873bp) protein (291aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Undecaprenyl-diphosphatase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2R9_9RHIZ
undecaprenol kinase
Displaying items 1-30 of 44 in total

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