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berkeley_reactor_200306_biofilm_scaffold_56669

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Displaying items 31-44 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_56669_30
unknown

Not on your lists

comp(35229..35495)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000372C247
Uncharacterized protein {ECO:0000313|EMBL:CPR21134.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56669_31
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(35492..35917)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037FCFB7
TfoX domain-containing protein
TfoX domain protein {ECO:0000313|EMBL:ABS14964.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
berkeley_reactor_200306_biofilm_scaffold_56669_32
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35929..36309)
DNA (381bp) protein (127aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LZV8_METRJ
iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:ACB23006.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
berkeley_reactor_200306_biofilm_scaffold_56669_33
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36411..36824)
DNA (414bp) protein (138aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YT52_9RHIZ
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:EIM27144.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
lactoylglutathione lyase
berkeley_reactor_200306_biofilm_scaffold_56669_34
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36829..37212)
DNA (384bp) protein (128aa)
FeS assembly SUF system protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZU2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC68920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56669_35
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37224..38480)
DNA (1257bp) protein (419aa)
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
cysteine desulfurase, partial n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037C0CEA
SufS subfamily cysteine desulfurase
berkeley_reactor_200306_biofilm_scaffold_56669_36
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38529..39854)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035D0DCD
Iron-sulfur cluster assembly protein SufD {ECO:0000313|EMBL:EJW11224.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
FeS assembly protein SufD
berkeley_reactor_200306_biofilm_scaffold_56669_37
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39862..40608)
DNA (747bp) protein (249aa)
FeS assembly ATPase SufC n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IRX5_METNO
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:ACL60675.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_56669_38
unknown

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comp(40612..40740)
DNA (129bp) protein (43aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_56669_39
bacterium YEK0313, Bacteria

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comp(40737..42209)
DNA (1473bp) protein (491aa)
FeS assembly protein SufB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT8_9RHIZ
FeS cluster assembly protein SufB {ECO:0000313|EMBL:CEJ13170.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
cysteine desulfurase activator complex subunit SufB
berkeley_reactor_200306_biofilm_scaffold_56669_40
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42261..43382)
DNA (1122bp) protein (374aa)
nifS; cysteine desulfurase (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZY1_9PROT
Cysteine desulfurase {ECO:0000313|EMBL:KJC55775.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
berkeley_reactor_200306_biofilm_scaffold_56669_41
Komagataeibacter hansenii, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43780..44361
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Gluconacetobacter hansenii ATCC 23769 RepID=D5QC75_GLUHA
Uncharacterized protein {ECO:0000313|EMBL:EFG85271.1}; TaxID=714995 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter hansenii ATCC 23769.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56669_42
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44371..45441)
DNA (1071bp) protein (357aa)
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Anhydro-N-acetylmuramic acid kinase n=2 Tax=Acidiphilium RepID=F0IX81_ACIMA
berkeley_reactor_200306_biofilm_scaffold_56669_43
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45479..46747
DNA (1269bp) protein (423aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQQ7_GRABC
Displaying items 31-44 of 44 in total

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