ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_56669_7

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(8265..9638)

Top 3 Functional Annotations

Value Algorithm Source
Type I secretion outer membrane protein, TolC family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ID98_METNO similarity UNIREF
DB: UNIREF100
  • Identity: 55.4
  • Coverage: 457.0
  • Bit_score: 487
  • Evalue 1.20e-134
Channel protein TolC {ECO:0000313|EMBL:KFG68348.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.4
  • Coverage: 466.0
  • Bit_score: 488
  • Evalue 9.80e-135
TolC family type I secretion outer membrane protein similarity KEGG
DB: KEGG
  • Identity: 55.4
  • Coverage: 457.0
  • Bit_score: 487
  • Evalue 3.40e-135

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microvirga aerilata → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1374
ATGAATCTCAATCGGATGATCGCGATATTGCTCGCGAGCGCTTCGCTCGTGGGCGTGACTGCGTCGGCGCGCGGGCAGACCATGGATGGGGCCCTGGCGCAGGCCTATATGTCGAATCCGACGCTCAACGCGCAGCGTGCAGGGGCCCGGGCCTATGACGAGAACGTGCCGCAGGCCCTCTCGGGCTACCGGCCGACGCTCTCGGCGACTGCCAATGCCGCGGCTCAAAGGGCCACTGCTGACGTCGCCAGCGGGCGCGAAGCCAGCACCCTGTTTCCGCGTGGCCTCGGCCTCGAGGTCAACCAGACCCTGTTCAACGGGTTTCAGACCGCGAACTCGGTGCGTTCGGCCGAGGCGGGCGTGCTGAGCCAGCGGGAGACCCTTCGCAACGTCGAGCAGAACGTGCTGCTCGACGCGGCGACCGCCTACATGAATGTGCTGCGCGACGCGGCGCTGCTCAACCTGGACCAGAACAACGTCGACGTGCTGGATGAGCAGCTCAAGCAGACCAACGACCGTTTCAACGTCGGCGAGGTCACCCGCACCGACGTCGAGCAGGCCAAGGCGAGCCTTGCCGGCGCCCGTTCGCAGGTGTTGGCGGCCCAGGCCCAGCTCAAGTCCTCCACCGCGGTCTATCGCCAGATCATCGGCTCGGTGCCGAAGCGGCTCGGTCCGGCCCGCTCGATCGACAAGCTTCTGCCGAGGAGCCAGCAGGCCGCCATCGATCTCGGCCTGAAGATCCATCCTTCGATCACCTCGGCCCTGCACGCGGTCGACTCGGCGGCCGCTCAGGTCAAGGTCGCCGAGGGCGCGCTCTATCCGACCGTGAGCGCCACGGCGTCGGTCTCGGACCAGTGGGAACCGAGCATCGGCACCCAGCACACCACCAGCGCGCAGATCGGAGCGACCCTGACGGTGCCGATCTACGAGGGCGGCGTGAACTATTCCAAGGTGCGACAGGCCAAGGAGACGCTCGGCCAGGCCCGTATCCAGGCCGATATCGCCCGCGAGCAGGTGCGGGCCGCCGTCGTCTCCGCCTGGGGCAATCTCGACGCCTCCACGGCGCAGATCCAGGCCAACCAGGCCCAGGTCGCGGCGGCGGAAGTAGCCCTCTCCGGCGTGCGCGAGGAAGCGAAGGTCGGCCAGCGCACCACGCTCGACGTGCTCAACCAGCAGCAGACCCTGCTCAACGCCCGCGTCACCCTGATCACGTCGCAGCGCGACCGGGTCGTCGCCGCCTTCACGCTGCTGTCGTCGGTCGGCAAGCTCAGCGCCAAGACGCTGAGCCTCAAGGTCGCGTCCTATGATCCGGCCGTGCACTACGACCAGGTGCGCGACAAGTGGATCGGCACCGAGACGCCCGACGGCCGTTGA
PROTEIN sequence
Length: 458
MNLNRMIAILLASASLVGVTASARGQTMDGALAQAYMSNPTLNAQRAGARAYDENVPQALSGYRPTLSATANAAAQRATADVASGREASTLFPRGLGLEVNQTLFNGFQTANSVRSAEAGVLSQRETLRNVEQNVLLDAATAYMNVLRDAALLNLDQNNVDVLDEQLKQTNDRFNVGEVTRTDVEQAKASLAGARSQVLAAQAQLKSSTAVYRQIIGSVPKRLGPARSIDKLLPRSQQAAIDLGLKIHPSITSALHAVDSAAAQVKVAEGALYPTVSATASVSDQWEPSIGTQHTTSAQIGATLTVPIYEGGVNYSKVRQAKETLGQARIQADIAREQVRAAVVSAWGNLDASTAQIQANQAQVAAAEVALSGVREEAKVGQRTTLDVLNQQQTLLNARVTLITSQRDRVVAAFTLLSSVGKLSAKTLSLKVASYDPAVHYDQVRDKWIGTETPDGR*