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berkeley_reactor_200306_biofilm_scaffold_111575_21

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 18248..19540

Top 3 Functional Annotations

Value Algorithm Source
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.9
  • Coverage: 433.0
  • Bit_score: 685
  • Evalue 3.00e-194
glyA; serine hydroxymethyltransferase (EC:2.1.2.1) similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 434.0
  • Bit_score: 674
  • Evalue 1.40e-191
serine hydroxymethyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030BB821 similarity UNIREF
DB: UNIREF100
  • Identity: 77.4
  • Coverage: 433.0
  • Bit_score: 688
  • Evalue 2.50e-195

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Taxonomy

Microvirga aerilata → Microvirga → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1293
ATGTCCAGCGCCACCGCCGCCCTGTCCAACAGCTTCTTCGCCGCGCCGCTCAGCGCCGCCGACCCGGAGATCGCCAAGGCGATCGACCTCGAGCTCGGGCGGCTGCGCGACCATATCGAGCTGATCGCCTCGGAGAACATCGTCTCCGGCGCCGTCCTGGAGGCGCAGGGCTCGATCATGACCAACAAATATGCGGAAGGGTATCCCGGCAAGCGCTATTACGGCGGCTGCGAGTTCGTCGACATCGCCGAGAAGCTGGCGATCGAGCGGGTCTGCAAGCTGTTCGACTGCAAGTTCGCCAATGTGCAGCCCAATTCCGGCAGCCAGGCCAATCAGGGCGTGTTCCTGGCGCTGATGAAGCCCGGCGAGACCTTCATGGGGCTCAACCTCAATGCCGGCGGCCATCTGACCCACGGCTCGGCCGTCAACATGTCGGGCCGCTGGTTCAACGTCGTGCCCTACAATGTCCGGCCCGACGACCAGCGCGTCGACATGGACGAGGTCGAGCGCCTCGCCCACGAGCACAAGCCGAAGATCATCATCGCCGGCGGCTCGGGCTATGCCCGGCACTGGGACTTCGCCCGCTTCCGGCAGATCTGCGACGCGGTCGGCGCCTATTTCGTCGTCGACATGGCGCATTTCGCCGGCCTGGTGGCGGGCGGCGCCCATCCCTCGCCGTTCCCGCACGCGCATGTCGCGACCTCGACCACCCACAAGACCCTGCGCGGCCCGCGCGGCGGCCTGATCCTCACCAATGACGAGGACCTCGCCAAGAAGATCAACTCGGCGGTGTTCCCCGGCCTGCAGGGCGGCCCGCTGATGCACGTGATCGCCGCCAAGGCCGTGGCCTTCGGCGAGGCGCTGCGCCCCGAGTTCAAGCACTACGCCGCCCAGGTGGTGGAGAACGCCAAGGCGCTGGCGGCCAACCTCAAGTCGAACGGCTTCGACATCGTCACCGGCGGCACCGACAACCACCTGATGCTGGTCGACCTCAGGCCGAAGGGCCTCACCGGCAACATCGCCGAGAAGGCGCTGGAGCGCGCCCACATCACCTGCAACAAGAACGGCATCCCCTACGACCCGCAGAAGCCGATGGTGACCTCGGGCGTGCGCCTGGGCTCGCCGGCCGCGACCTCGCGCGGCTTCGGCGTCGCCGAGTTCCGCGAGGTCGGCGACCTCATCACCGAGGCGCTCGAGGGCCTGGCCAGGAACGGCCCGGACGGCAACGGCGCGGTCGAGGAGGTCGTGCGCGCCAAGGTCAACCGGCTGACCGCGCGCTTTCCGATTTACTGA
PROTEIN sequence
Length: 431
MSSATAALSNSFFAAPLSAADPEIAKAIDLELGRLRDHIELIASENIVSGAVLEAQGSIMTNKYAEGYPGKRYYGGCEFVDIAEKLAIERVCKLFDCKFANVQPNSGSQANQGVFLALMKPGETFMGLNLNAGGHLTHGSAVNMSGRWFNVVPYNVRPDDQRVDMDEVERLAHEHKPKIIIAGGSGYARHWDFARFRQICDAVGAYFVVDMAHFAGLVAGGAHPSPFPHAHVATSTTHKTLRGPRGGLILTNDEDLAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRPEFKHYAAQVVENAKALAANLKSNGFDIVTGGTDNHLMLVDLRPKGLTGNIAEKALERAHITCNKNGIPYDPQKPMVTSGVRLGSPAATSRGFGVAEFREVGDLITEALEGLARNGPDGNGAVEEVVRAKVNRLTARFPIY*