ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_111575_60

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(59352..60416)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CE4C38 related cluster n=1 Tax=unknown RepID=UPI0003CE4C38 similarity UNIREF
DB: UNIREF100
  • Identity: 71.8
  • Coverage: 354.0
  • Bit_score: 510
  • Evalue 1.00e-141
LacI family transcriptional regulator {ECO:0000313|EMBL:ESY79846.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.8
  • Coverage: 354.0
  • Bit_score: 510
  • Evalue 1.40e-141
periplasmic binding protein/LacI transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 67.2
  • Coverage: 345.0
  • Bit_score: 453
  • Evalue 5.50e-125

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium sp. LNHC220B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1065
ATGTTCAGGACATCCATCATCGCGGCGTTCGCCGCAGCCGGCCTGCTGGCCGCGGCCGGCCCGGCGCTGGCCGACGGCACCGTCGGCCCCGGCGGCGAGGCGGCGACGCCGTCGAGCGCCGTGACGCTGTCGGACGCCGAGGCCGCCAAGCTGAAAGAGGGCAAGTACACCGCCGCCCTGCTCTGGCACACGTCGTCGGATTTCGTGAACGCGGTCACCGCCGGCGCCAAGGACGAGTTCGCCCGCCTCGGCATTTCGGTTGTGGCCGAGACCGATGCCGGCTTCGACGCCGCCAAGCAGAAGAGCGACGTCGAGACCATCCTGGCCAAGAAGCCGAGCGCCATCCTGGCCCTGCCGCTCGATCCCGTCACCGCGGCCGAGGCGTTCAAGCCGGCCGTCGCCTCGGGCGTCAAGATCGTGCTCCTGTCCAACAAGCCCAAGGACTTCGTCCAGGGCAAGGACTACGTCGCCATCGTCACCGACGACCTCTACGAGATGGGCAAGCACGCGGCCGACGGATTGGCCGAGGCCATCGGCCGGAAGGGCAAGATCGCCTGGATCTATCACGACGCCCAGTACTACGTGACCAACCAGCGCGACAACGCCTTCAAGGCGACGATCGAGAAGGACTACCCCGACATCAAGATCGTGGCGTCGCAGGGCATTTCGGACCCGGCCCGGGCCGAGGACATCGCCAACGCCATCCTCCTCAAGAACCCCGACCTCGACGGCATCTACGTCACCTGGGCCGAGCCGGCCGAAGGCGTGCTTGCGGCCCTGCGCGCCGCCGGCAACAGCCGGACCAAGGTCGTCACGCTCGACCTCTCCGAGCCCGTCGGCCTCGACATGGTCAAGGGCGGCAACGTCGCCGCCATCGCCGCCGACAAGGCCTATGAGCTCGGCCGCGCCATGGCGGCGGCCGCCGGCTACGGCCTCCTCGGCAAGCCGGCGCCCGCCTTCATCGTCGCGCCGGTGCTGACCGTCACCAAGGCGAACGTCGTCCAGGGCTGGCAGGACTCGCTGCATCGCCCGGCGCCGCAGTCGATCCTCGACGCGGCCAAGTAA
PROTEIN sequence
Length: 355
MFRTSIIAAFAAAGLLAAAGPALADGTVGPGGEAATPSSAVTLSDAEAAKLKEGKYTAALLWHTSSDFVNAVTAGAKDEFARLGISVVAETDAGFDAAKQKSDVETILAKKPSAILALPLDPVTAAEAFKPAVASGVKIVLLSNKPKDFVQGKDYVAIVTDDLYEMGKHAADGLAEAIGRKGKIAWIYHDAQYYVTNQRDNAFKATIEKDYPDIKIVASQGISDPARAEDIANAILLKNPDLDGIYVTWAEPAEGVLAALRAAGNSRTKVVTLDLSEPVGLDMVKGGNVAAIAADKAYELGRAMAAAAGYGLLGKPAPAFIVAPVLTVTKANVVQGWQDSLHRPAPQSILDAAK*