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berkeley_reactor_200306_biofilm_scaffold_111575

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Displaying items 61-90 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_111575_60
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59352..60416)
DNA (1065bp) protein (355aa)
UPI0003CE4C38 related cluster n=1 Tax=unknown RepID=UPI0003CE4C38
LacI family transcriptional regulator {ECO:0000313|EMBL:ESY79846.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
periplasmic binding protein/LacI transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_61
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60454..61713)
DNA (1260bp) protein (420aa)
Peptidase M20 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXA6_9RHIZ
Peptidase M20 {ECO:0000313|EMBL:ENN85386.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
acetylornithine deacetylase
berkeley_reactor_200306_biofilm_scaffold_111575_62
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61710..62918)
DNA (1209bp) protein (403aa)
ROK family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2K8_9RHIZ
Two-component system, OmpR family, sensor histidine kinase KdpD {ECO:0000313|EMBL:KFC75682.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ROK family protein
berkeley_reactor_200306_biofilm_scaffold_111575_63
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62991..63974)
DNA (984bp) protein (328aa)
Transcriptional regulator n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WTX4_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KJC42177.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
matR; transcriptional regulator (activator) protein
berkeley_reactor_200306_biofilm_scaffold_111575_64
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64175..64981
DNA (807bp) protein (269aa)
ABC transporter, substrate binding protein (Amino acid) n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CL48_AGRT5
Amino acid ABC transporter {ECO:0000313|EMBL:KJC48536.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ABC transporter substrate binding protein (amino acid)
berkeley_reactor_200306_biofilm_scaffold_111575_65
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65013..65735
DNA (723bp) protein (241aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WBM4_9BRAD
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:EJN16152.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
amino acid ABC transporter
berkeley_reactor_200306_biofilm_scaffold_111575_66
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65747..66493
DNA (747bp) protein (249aa)
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I654_9BRAD
Glutamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC48538.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
ABC transporter nucleotide binding/ATPase
berkeley_reactor_200306_biofilm_scaffold_111575_67
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66505..67668
DNA (1164bp) protein (388aa)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3D007_9BRAD
Acetylornithine deacetylase {ECO:0000313|EMBL:KJC48539.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
argE; acetylornithine deacetylase
berkeley_reactor_200306_biofilm_scaffold_111575_68
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67673..68767
DNA (1095bp) protein (365aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WTX7_9BRAD
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EJN16155.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
muconate cycloisomerase I protein
berkeley_reactor_200306_biofilm_scaffold_111575_69
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68769..69944
DNA (1176bp) protein (392aa)
Creatinase n=1 Tax=Serratia sp. M24T3 RepID=I0QS14_9ENTR
Creatinase {ECO:0000313|EMBL:EIC84087.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
Mandelate racemase/muconate lactonizing protein
berkeley_reactor_200306_biofilm_scaffold_111575_70
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69970..70893
DNA (924bp) protein (308aa)
Dihydrodipicolinate synthetase n=1 Tax=Rahnella sp. (strain Y9602) RepID=E8XWV9_RAHSY
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:KJC56110.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Dihydrodipicolinate synthetase
berkeley_reactor_200306_biofilm_scaffold_111575_71
Rahnella aquatilis, Rahnella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70940..72160)
DNA (1221bp) protein (407aa)
Aminotransferase class I and II n=2 Tax=Rahnella RepID=E8XW94_RAHSY
class I and II aminotransferase
Class I and II aminotransferase {ECO:0000313|EMBL:AFE57850.1}; TaxID=1151116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Rahnella.;" source="Rahnella aquatilis HX2.;"
berkeley_reactor_200306_biofilm_scaffold_111575_72
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72384..73649
DNA (1266bp) protein (422aa)
CTP synthase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JLV7_AGRRK
CTP synthase
CTP synthase (UTP-ammonia lyase) {ECO:0000313|EMBL:EJK87967.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_111575_73
Candidatus Burkholderia kirkii, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74026..74349
DNA (324bp) protein (108aa)
Transcriptional regulator, ArsR family n=1 Tax=Candidatus Burkholderia kirkii UZHbot1 RepID=G4MHD2_9BURK
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CCD40561.1}; TaxID=1055526 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Candidatus Burkholderia kirkii UZHbot1.;"
helix-turn-helix protein
berkeley_reactor_200306_biofilm_scaffold_111575_74
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74342..74800
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361677E
Uncharacterized protein {ECO:0000313|EMBL:ENN87731.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
regulatory protein
berkeley_reactor_200306_biofilm_scaffold_111575_75
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74844..75452)
DNA (609bp) protein (203aa)
UPI0003D06877 related cluster n=1 Tax=unknown RepID=UPI0003D06877
TetR family transcriptional regulator {ECO:0000313|EMBL:ESZ19530.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_76
unknown

Not on your lists

75659..75916
DNA (258bp) protein (86aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_111575_77
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75910..79074
DNA (3165bp) protein (1055aa)
UPI0003CE8D03 related cluster n=1 Tax=unknown RepID=UPI0003CE8D03
Multidrug efflux system protein {ECO:0000313|EMBL:CDX33455.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
berkeley_reactor_200306_biofilm_scaffold_111575_78
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79093..80232
DNA (1140bp) protein (380aa)
UPI0003CF0A71 related cluster n=1 Tax=unknown RepID=UPI0003CF0A71
RND family efflux transporter MFP subunit
Hemolysin D {ECO:0000313|EMBL:ESY73235.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
berkeley_reactor_200306_biofilm_scaffold_111575_79
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80415..81923
DNA (1509bp) protein (503aa)
UPI0003CEE6A0 related cluster n=1 Tax=unknown RepID=UPI0003CEE6A0
Transcriptional regulator {ECO:0000313|EMBL:ESX99421.1}; TaxID=1287281 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC405B00.;"
DeoR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_80
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82004..83254
DNA (1251bp) protein (417aa)
UPI0003CF3A00 related cluster n=1 Tax=unknown RepID=UPI0003CF3A00
Aminotransferase {ECO:0000313|EMBL:ESY38920.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_81
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

83328..85553
DNA (2226bp) protein (742aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PSY4_9ACTO
Large subunit of N,N-dimethylformamidase {ECO:0000313|EMBL:EHQ63606.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
large subunit of N,N-dimethylformamidase
berkeley_reactor_200306_biofilm_scaffold_111575_82
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

85561..86607
DNA (1047bp) protein (349aa)
Inner-membrane translocator n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ14_CONWI
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ADB49888.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
berkeley_reactor_200306_biofilm_scaffold_111575_83
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

86604..87407
DNA (804bp) protein (268aa)
ABC transporter related protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ15_CONWI
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADB49889.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
berkeley_reactor_200306_biofilm_scaffold_111575_84
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

87447..88403
DNA (957bp) protein (319aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZ16_CONWI
periplasmic binding protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ADB49890.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
berkeley_reactor_200306_biofilm_scaffold_111575_85
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88583..88813
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PXF8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM74529.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_86
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88925..89140
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036D9A10
CsbD-like family protein {ECO:0000313|EMBL:AID31420.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_87
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89318..89746)
DNA (429bp) protein (143aa)
Bll5579 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IQ5_BRADU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGJ71161.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
berkeley_reactor_200306_biofilm_scaffold_111575_88
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89860..92226)
DNA (2367bp) protein (789aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
ATP-dependent DNA helicase UvrD/PcrA n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RPW1_9RHIZ
UvrD/REP helicase
berkeley_reactor_200306_biofilm_scaffold_111575_89
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92382..93929
DNA (1548bp) protein (516aa)
Acetolactate synthase I n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98FY4_RHILO
thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase
Acetolactate synthase I {ECO:0000313|EMBL:BAB50432.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
Displaying items 61-90 of 156 in total

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