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berkeley_reactor_200306_biofilm_scaffold_111575

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Displaying items 31-60 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_111575_31
bacterium YEK0313, Bacteria

Not on your lists

comp(28639..29328)
DNA (690bp) protein (230aa)
Transcriptional regulator, MerR family n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAS4_9RHIZ
MerR family regulatory protein {ECO:0000313|EMBL:CEJ13514.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
MerR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_32
bacterium YEK0313, Bacteria

Not on your lists

comp(29361..29678)
DNA (318bp) protein (106aa)
Integration host factor subunit alpha n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=IHFA_XANP2
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ihfA; integration host factor subunit alpha
berkeley_reactor_200306_biofilm_scaffold_111575_33
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29804..30781)
DNA (978bp) protein (326aa)
3-oxoacyl-(acyl carrier protein) synthase III (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
3-oxoacyl-ACP synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035E2E65
berkeley_reactor_200306_biofilm_scaffold_111575_34
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30781..31839)
DNA (1059bp) protein (353aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Phosphate acyltransferase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NMF6_9RHOB
plsX; Fatty acid/phospholipid synthesis protein plsX
berkeley_reactor_200306_biofilm_scaffold_111575_35
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32072..33436)
DNA (1365bp) protein (455aa)
sdaA; L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase 1 {ECO:0000313|EMBL:EGO96393.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EGO96393.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
L-serine ammonia-lyase n=3 Tax=Acidiphilium RepID=A5FX81_ACICJ
berkeley_reactor_200306_biofilm_scaffold_111575_trna_1
unknown

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33715..33787
DNA (73bp)
transferRNA Thr
berkeley_reactor_200306_biofilm_scaffold_111575_36
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34307..35284
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJU2_METS4
Uncharacterized protein {ECO:0000313|EMBL:KFG69450.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_37
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35301..36350)
DNA (1050bp) protein (350aa)
membrane protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9C9
bile acid:sodium symporter
Bile acid:sodium symporter {ECO:0000313|EMBL:ACK52599.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_111575_38
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36451..37353
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJA6_METSB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACK52598.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_111575_39
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37524..37895
DNA (372bp) protein (124aa)
ArsR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F739
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETR79370.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_40
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37888..38415
DNA (528bp) protein (176aa)
Protein tyrosine phosphatase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11LJ6_MESSB
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETR79371.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
protein tyrosine phosphatase
berkeley_reactor_200306_biofilm_scaffold_111575_41
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38424..38849
DNA (426bp) protein (142aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
arsenate reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F8DCF2
arsenate reductase
berkeley_reactor_200306_biofilm_scaffold_111575_42
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38858..39922
DNA (1065bp) protein (355aa)
Arsenical-resistance protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAB3_OLICO
Arsenic transporter {ECO:0000313|EMBL:ETR79373.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative arsenite efflux pump protein
berkeley_reactor_200306_biofilm_scaffold_111575_43
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39983..40303
DNA (321bp) protein (107aa)
Transcriptional regulator, ArsR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11N23_MESSB
ArsR family transcriptional regulator {ECO:0000313|EMBL:ETR79374.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ArsR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_111575_44
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40351..41745
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003161024
Flavoprotein {ECO:0000313|EMBL:ETR79375.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_45
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41742..42971
DNA (1230bp) protein (410aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3R8_9RHIZ
MFS transporter {ECO:0000313|EMBL:ETR79376.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
major facilitator superfamily protein
berkeley_reactor_200306_biofilm_scaffold_111575_46
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43112..44773)
DNA (1662bp) protein (554aa)
Bifunctional protein : sensor, cNMP-binding domain-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y3G0_RAMTT
hypothetical protein
Bifunctional protein : sensor, cNMP-binding domain-like protein {ECO:0000313|EMBL:AEG92434.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
berkeley_reactor_200306_biofilm_scaffold_111575_47
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44841..45473)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036D3C87
Acetyltransferase {ECO:0000313|EMBL:EJZ18359.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
GCN5-related N-acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_111575_48
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45530..45838
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDW6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV10209.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_49
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45838..47334
DNA (1497bp) protein (499aa)
UPI0003CE6086 related cluster n=1 Tax=unknown RepID=UPI0003CE6086
UPF0061 protein X772_36255 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_50
unknown

Not on your lists

comp(47365..48207)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4F705
berkeley_reactor_200306_biofilm_scaffold_111575_51
gamma proteobacterium HIMB55, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48422..49363)
DNA (942bp) protein (314aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NRZ8_9GAMM
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EHQ58009.1}; TaxID=745014 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium HIMB55.;"
NAD-dependent epimerase/dehydratase
berkeley_reactor_200306_biofilm_scaffold_111575_52
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49454..50914)
DNA (1461bp) protein (487aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7L2D7_METC4
uracil-DNA glycosylase superfamily protein
Uracil-DNA glycosylase superfamily {ECO:0000313|EMBL:ACK83422.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
berkeley_reactor_200306_biofilm_scaffold_111575_53
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50914..52125)
DNA (1212bp) protein (404aa)
Putative DNA modification/repair radical SAM protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZWM8_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIB15220.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
berkeley_reactor_200306_biofilm_scaffold_111575_54
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52282..53094
DNA (813bp) protein (271aa)
Extensin family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQJ6_METSB
extensin family protein
Extensin family protein {ECO:0000313|EMBL:ACK52209.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_111575_55
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53177..55231
DNA (2055bp) protein (685aa)
peptidyl-dipeptidase Dcp (EC:3.4.15.5)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BD3CC
Peptidase M3 {ECO:0000313|EMBL:KGM31912.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
berkeley_reactor_200306_biofilm_scaffold_111575_56
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55197..55976)
DNA (780bp) protein (260aa)
Sugar ABC transporter ATP-binding protein n=2 Tax=Labrenzia RepID=U7GAB6_9RHOB
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERP93581.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_111575_57
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55984..57174)
DNA (1191bp) protein (397aa)
UPI0003D00D9A related cluster n=1 Tax=unknown RepID=UPI0003D00D9A
Amino acid racemase {ECO:0000313|EMBL:KKB84161.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_111575_58
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57189..58133)
DNA (945bp) protein (315aa)
UPI0003CE5995 related cluster n=1 Tax=unknown RepID=UPI0003CE5995
ABC transporter permease {ECO:0000313|EMBL:KFL32199.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_111575_59
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58197..59264)
DNA (1068bp) protein (356aa)
LacI family transcriptional regulator n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HUD1_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:ESZ66911.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
periplasmic binding protein/LacI transcriptional regulator
Displaying items 31-60 of 156 in total

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