name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_111575_1
unknown
|
Not on your lists |
comp(2..202)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_111575_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(830..2194)
|
Type I secretion outer membrane protein, TolC family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL93_9RHIZ
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EIM24735.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
TolC family type I secretion outer membrane protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_3
unknown
|
Not on your lists |
comp(2208..2483)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_111575_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2644..3402
|
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036AE215
Transcriptional regulator {ECO:0000313|EMBL:KGM30769.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
OmpR family two component response transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3402..4739
|
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000362CBCE
two component sensor histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4763..5512)
|
arginyltransferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAE4_STAND
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5612..6958)
|
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z085_9RHIZ
Branched-chain amino acid ABC-type transport system permease component {ECO:0000313|EMBL:KFC65220.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inner-membrane translocator
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_8
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria
|
Not on your lists |
comp(7223..7864)
|
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037EB2AA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ40148.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8062..9189
|
ABC transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D2CD7A
Extracellular ligand-binding receptor {ECO:0000313|EMBL:KFC67645.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular ligand-binding receptor
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9255..9563
|
Possible selenoprotein, W-related family n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YFL5_MOBAS
SelT/selW/selH selenoprotein domain protein {ECO:0000313|EMBL:KFC66568.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_11
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9734..10039
|
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003687BC3
Putative integral membrane protein {ECO:0000313|EMBL:EJN08943.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
membrane protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10083..11012
|
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003736454
hypothetical protein
UPF0276 protein Rleg_5938 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11002..11796
|
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EMT8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV06074.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_14
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11793..12305
|
membrane protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367B3CD
DoxX family protein {ECO:0000313|EMBL:CCM79101.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12359..13405)
|
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Delta-aminolevulinic acid dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z087_9RHIZ
delta-aminolevulinic acid dehydratase
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_16
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13626..14033
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EABB98
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK85380.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_17
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14633..15145
|
MarR family transcriptional regulator n=1 Tax=Methyloferula stellata RepID=UPI000366DA7E
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACK51052.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_18
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15304..15756
|
Uncharacterized protein n=1 Tax=Burkholderia cenocepacia KC-01 RepID=V4ZF21_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KDV24322.1}; Flags: Fragment;; TaxID=1395570 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia JBK9.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15808..16392)
|
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y5W1_9RHIZ
Membrane protein {ECO:0000313|EMBL:KKB84960.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_20
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16762..18009
|
Peptidoglycan-binding domain 1 protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UML7_METS4
peptidoglycan binding domain-containing protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ACA17516.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_21
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18248..19540
|
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
serine hydroxymethyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030BB821
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19640..20119
|
NrdR family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI00036D4C81
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
nrdR; transcriptional regulator NrdR
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_23
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20447..21523
|
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodovulum sp. PH10 RepID=J6UC22_9RHOB
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_24
bacterium YEK0313, Bacteria
|
Not on your lists |
21526..22143
|
Riboflavin synthase, alpha subunit n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QX82_METTR
Riboflavin synthase {ECO:0000313|EMBL:CEJ12188.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
riboflavin synthase subunit alpha
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_25
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22286..22792
|
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAF8_STAND
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22789..23250
|
N utilization substance protein B homolog n=1 Tax=Afipia sp. 1NLS2 RepID=D6V9W8_9BRAD
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
nusB; transcription antitermination protein NusB
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_27
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23293..23670
|
hypothetical protein n=1 Tax=Rhizobium gallicum RepID=UPI00037A66ED
Uncharacterized protein {ECO:0000313|EMBL:EJN07675.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_28
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23667..24653
|
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Thiamine-monophosphate kinase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UHS7_METS4
thiamine-monophosphate kinase
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24998..26011)
|
GumN family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL74_9RHIZ
GumN family protein {ECO:0000313|EMBL:EHK58558.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
GumN family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_111575_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26369..28519
|
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Flags: Precursor;; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
pyrophosphatase n=1 Tax=Kaistia granuli RepID=UPI000372D73F
hppA; membrane-bound proton-translocating pyrophosphatase
|