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2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

In projects: 2019_SCN_bioreactor_200211_biofilm  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_200211_biofilm_UNK

Properties

Avg. coverage: 15.46 Longest contig: 373.91 Kbp Bin length: 7.56 Mbp GC content: 69.51 %
Contigs count: 104 Features count: 7229 rRNAs count: 0 tRNAs count: 43

Genome completeness

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_biofilm_scaffold_95231
Order: Rhizobiales (62.73%)
373 373914 bp 69.43 15.14 91.33
berkeley_reactor_200306_biofilm_scaffold_35412
Order: Rhizobiales (63.64%)
319 344766 bp 69.31 15.68 90.74
berkeley_reactor_200306_biofilm_scaffold_41811
Order: Rhizobiales (56.59%)
311 338217 bp 69.19 15.49 91.09
berkeley_reactor_200306_biofilm_scaffold_9338
Order: Rhizobiales (65.38%)
234 240832 bp 70.15 15.69 90.65
berkeley_reactor_200306_biofilm_scaffold_10683
Order: Rhizobiales (63.27%)
226 229361 bp 68.35 15.61 89.32
berkeley_reactor_200306_biofilm_scaffold_139709
Order: Rhizobiales (52.34%)
214 236897 bp 69.62 15.49 90.82
berkeley_reactor_200306_biofilm_scaffold_12255
Order: Rhizobiales (63.1%)
187 195104 bp 69.63 15.25 89.42
berkeley_reactor_200306_biofilm_scaffold_87643
Order: Rhizobiales (54.02%)
174 170174 bp 67.29 15.75 88.78
berkeley_reactor_200306_biofilm_scaffold_111575
Order: Rhizobiales (68.59%)
156 160912 bp 69.06 14.99 88.41
berkeley_reactor_200306_biofilm_scaffold_103592
Order: Rhizobiales (64.94%)
154 152324 bp 69.81 15.27 90.49
berkeley_reactor_200306_biofilm_scaffold_20018
Order: Rhizobiales (54.73%)
148 145153 bp 69.33 15.08 88.05
berkeley_reactor_200306_biofilm_scaffold_22810
Order: Rhizobiales (57.82%)
147 150696 bp 69.77 15.71 89.21
berkeley_reactor_200306_biofilm_scaffold_34479
Order: Rhizobiales (61.97%)
142 160630 bp 69.63 15.19 89.59
berkeley_reactor_200306_biofilm_scaffold_54892
Order: Rhizobiales (62.14%)
140 152845 bp 69.04 15.67 89.17
berkeley_reactor_200306_biofilm_scaffold_28919
Order: Rhizobiales (66.67%)
132 152295 bp 68.99 15.76 90.65
berkeley_reactor_200306_biofilm_scaffold_5879
Order: Rhizobiales (55.12%)
127 129561 bp 69.28 15.62 91.56
berkeley_reactor_200306_biofilm_scaffold_44015
Order: Rhizobiales (65.04%)
123 115513 bp 68.89 15.20 89.59
berkeley_reactor_200306_biofilm_scaffold_66949
Order: Rhizobiales (55.37%)
121 126269 bp 69.53 15.53 89.83
berkeley_reactor_200306_biofilm_scaffold_55848
Order: Rhizobiales (59.32%)
118 121096 bp 70.13 16.21 90.74
berkeley_reactor_200306_biofilm_scaffold_116766
Order: Rhizobiales (63.79%)
116 128301 bp 69.19 15.25 91.91
berkeley_reactor_200306_biofilm_scaffold_79982
Order: Rhizobiales (71.93%)
114 119859 bp 69.73 15.33 89.55
berkeley_reactor_200306_biofilm_scaffold_154490
Order: Rhizobiales (75.45%)
110 106361 bp 70.16 15.45 89.63
berkeley_reactor_200306_biofilm_scaffold_116353
Order: Rhizobiales (62.73%)
110 114335 bp 67.66 15.90 91.02
berkeley_reactor_200306_biofilm_scaffold_23616
Order: Rhizobiales (67.27%)
110 116015 bp 70.81 14.80 91.42
berkeley_reactor_200306_biofilm_scaffold_73177
Order: Rhizobiales (50.46%)
109 109851 bp 70.21 15.83 90.73
berkeley_reactor_200306_biofilm_scaffold_24940
Order: Rhizobiales (71.15%)
104 110232 bp 69.61 15.66 88.44
berkeley_reactor_200306_biofilm_scaffold_10611
Order: Rhizobiales (66.67%)
102 108552 bp 69.53 15.39 89.25
berkeley_reactor_200306_biofilm_scaffold_141566
Order: Rhizobiales (68.69%)
99 115315 bp 70.02 16.00 92.26
berkeley_reactor_200306_biofilm_scaffold_151446
Order: Rhizobiales (56.57%)
99 104519 bp 69.28 16.20 90.28
berkeley_reactor_200306_biofilm_scaffold_56793
Order: Rhizobiales (55.56%)
90 90214 bp 68.87 15.93 89.75
berkeley_reactor_200306_biofilm_scaffold_41009
Order: Rhizobiales (59.3%)
86 91549 bp 68.99 15.79 86.78
berkeley_reactor_200306_biofilm_scaffold_112583
Order: Rhizobiales (50.6%)
83 92787 bp 70.40 15.54 92.38
berkeley_reactor_200306_biofilm_scaffold_24673
Order: Rhizobiales (70.37%)
81 78814 bp 70.28 15.78 92.19
berkeley_reactor_200306_biofilm_scaffold_115287
Order: Rhizobiales (62.96%)
81 84242 bp 70.87 15.05 88.75
berkeley_reactor_200306_biofilm_scaffold_16012
Order: Rhizobiales (53.09%)
81 80573 bp 69.93 15.55 88.78
berkeley_reactor_200306_biofilm_scaffold_63135
Order: Rhizobiales (61.33%)
75 75479 bp 70.10 15.88 91.63
berkeley_reactor_200306_biofilm_scaffold_12839
Order: Rhizobiales (77.33%)
75 72513 bp 70.66 14.76 89.95
berkeley_reactor_200306_biofilm_scaffold_131415
Order: Rhizobiales (57.14%)
70 80031 bp 68.01 15.72 88.64
berkeley_reactor_200306_biofilm_scaffold_48742
Order: Rhizobiales (55.07%)
69 70981 bp 70.45 15.76 90.50
berkeley_reactor_200306_biofilm_scaffold_28866
Order: Rhizobiales (64.06%)
64 76605 bp 69.14 15.62 86.87
berkeley_reactor_200306_biofilm_scaffold_118653
Order: Rhizobiales (57.81%)
64 67911 bp 70.30 14.99 90.05
berkeley_reactor_200306_biofilm_scaffold_132711
Genus: Mesorhizobium (54.69%)
64 69231 bp 68.34 15.69 91.28
berkeley_reactor_200306_biofilm_scaffold_53974
Order: Rhizobiales (58.06%)
62 67845 bp 70.37 15.57 90.68
berkeley_reactor_200306_biofilm_scaffold_140837
Order: Rhizobiales (80.33%)
61 62841 bp 70.97 15.27 93.55
berkeley_reactor_200306_biofilm_scaffold_4471
Order: Rhizobiales (61.67%)
60 61996 bp 69.13 15.75 91.09
berkeley_reactor_200306_biofilm_scaffold_127933
Order: Rhizobiales (67.8%)
59 62756 bp 70.18 15.19 92.11
berkeley_reactor_200306_biofilm_scaffold_7733
Order: Rhizobiales (57.63%)
59 73603 bp 71.09 14.67 91.43
berkeley_reactor_200306_biofilm_scaffold_154241
Order: Rhizobiales (67.86%)
56 57861 bp 70.35 14.85 89.32
berkeley_reactor_200306_biofilm_scaffold_157852
Order: Rhizobiales (58.18%)
55 54805 bp 70.06 15.27 90.45
berkeley_reactor_200306_biofilm_scaffold_106759
Order: Rhizobiales (67.92%)
53 57416 bp 69.79 15.29 92.86
Displaying items 1-50 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.