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berkeley_reactor_200306_biofilm_scaffold_35412

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Displaying items 1-30 of 319 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_35412_1
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..216)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CR25_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EFO29918.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_35412_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(216..1865)
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E2T2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDX46673.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_35412_3
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1862..2842)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI0002F60553
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABK17965.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
berkeley_reactor_200306_biofilm_scaffold_35412_4
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2839..3582)
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW95011.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Putative high-affinity branched-chain amino acid transport ATP-binding protein id=2028457 bin=GWB2_Chloroflexi_49_20 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_35412_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3579..4286)
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJL5_9RHIZ
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHK59075.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_35412_6
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4288..5175)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Brevibacillus sp. phR RepID=UPI000317851A
Uncharacterized protein {ECO:0000313|EMBL:ETX08371.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
leucine/isoleucine/valine ABC transporter; permease component (LivH-like)
berkeley_reactor_200306_biofilm_scaffold_35412_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5172..6368)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036EEA89
Uncharacterized protein {ECO:0000313|EMBL:ETW95010.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
extracellular ligand-binding receptor
berkeley_reactor_200306_biofilm_scaffold_35412_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6365..7438)
DNA (1074bp) protein (358aa)
Membrane dipeptidase family protein 1 {ECO:0000313|EMBL:CDX22905.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CDX22905.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
membrane dipeptidase family protein 1 (EC:3.4.13.19)
Membrane dipeptidase family protein 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNM8_ACHXA
berkeley_reactor_200306_biofilm_scaffold_35412_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7438..8886)
DNA (1449bp) protein (483aa)
Aldehyde dehydrogenase, thermostable {ECO:0000313|EMBL:CDX22907.1}; EC=1.2.1.5 {ECO:0000313|EMBL:CDX22907.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ycbD; putative aldehyde dehydrogenase YcbD (EC:1.2.1.3)
Putative aldehyde dehydrogenase YcbD n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R2W5_9PSED
berkeley_reactor_200306_biofilm_scaffold_35412_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8992..9918
DNA (927bp) protein (309aa)
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNM9_ACHXA
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 {ECO:0000313|EMBL:CDX22910.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_35412_11
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10010..11107
DNA (1098bp) protein (366aa)
SAM dependent carboxyl methyltransferase n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZZX7_9PROT
SAM dependent carboxyl methyltransferase {ECO:0000313|EMBL:CDX46669.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SAM dependent carboxyl methyltransferase
berkeley_reactor_200306_biofilm_scaffold_35412_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11121..12437)
DNA (1317bp) protein (439aa)
Feruloyl-CoA synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GV62_9BRAD
putative 4-aminobutyrate aminotransferase and related aminotransferase
Putative 4-aminobutyrate aminotransferase and related aminotransferase {ECO:0000313|EMBL:AHK46037.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_35412_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12443..13534)
DNA (1092bp) protein (364aa)
Aminoglycoside phosphotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD53_9RHIZ
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EYR78094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phosphotransferase
berkeley_reactor_200306_biofilm_scaffold_35412_14
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13567..14412)
DNA (846bp) protein (282aa)
Polyamine ABC transporter permease n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2L8U2_9GAMM
Polyamine ABC transporter permease {ECO:0000313|EMBL:EPC04259.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
ABC-type transporter, integral membrane subunit
berkeley_reactor_200306_biofilm_scaffold_35412_15
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14414..15655)
DNA (1242bp) protein (414aa)
Spermidine Putrescine ABC transporter permease component PotB n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HSH3_9PROT
Spermidine Putrescine ABC transporter permease component PotB {ECO:0000313|EMBL:EKV31286.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
ABC-type transporter, integral membrane subunit
berkeley_reactor_200306_biofilm_scaffold_35412_16
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15720..16808)
DNA (1089bp) protein (363aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Leucothrix mucor RepID=UPI0003B2F182
Spermidine/putrescine-binding periplasmic protein
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EKX55853.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
berkeley_reactor_200306_biofilm_scaffold_35412_17
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16855..18039)
DNA (1185bp) protein (395aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
potA-6; spermidine/putrescine ABC transporter ATP-binding protein PotA 6 (EC:3.6.3.31)
UPI0003CDF0EA related cluster n=1 Tax=unknown RepID=UPI0003CDF0EA
berkeley_reactor_200306_biofilm_scaffold_35412_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18246..19046
DNA (801bp) protein (267aa)
UPI0003CF3078 related cluster n=1 Tax=unknown RepID=UPI0003CF3078
Putative transcriptional regulator {ECO:0000313|EMBL:EYR81935.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
IclR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_35412_19
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19066..20022)
DNA (957bp) protein (319aa)
UPI0003CE476A related cluster n=1 Tax=unknown RepID=UPI0003CE476A
Agmatinase {ECO:0000313|EMBL:ESW79948.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
3-guanidinopropionase GpuA
berkeley_reactor_200306_biofilm_scaffold_35412_20
bacterium YEK0313, Bacteria

Not on your lists

comp(20046..21374)
DNA (1329bp) protein (443aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Acidovorax sp. CF316 RepID=J0TZZ9_9BURK
Beta-phenylalanine transaminase {ECO:0000313|EMBL:CEJ10236.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
berkeley_reactor_200306_biofilm_scaffold_35412_21
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21544..22917
DNA (1374bp) protein (458aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
Aminotransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FJQ9_9RHIZ
Aminotransferase {ECO:0000313|EMBL:CCV16478.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
berkeley_reactor_200306_biofilm_scaffold_35412_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22917..24185
DNA (1269bp) protein (423aa)
allantoate amidohydrolase (EC:3.5.1.87)
Hydantoinase/carbamoylase family amidase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAE2_9BRAD
Hydantoinase/carbamoylase family amidase {ECO:0000313|EMBL:ERF81441.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
berkeley_reactor_200306_biofilm_scaffold_35412_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24182..24970
DNA (789bp) protein (263aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XTM7_PARAH
Uncharacterized protein {ECO:0000313|EMBL:KFL30013.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
berkeley_reactor_200306_biofilm_scaffold_35412_24
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24979..26208)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y756_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMS42666.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
amidohydrolase 3
berkeley_reactor_200306_biofilm_scaffold_35412_25
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26205..27791)
DNA (1587bp) protein (529aa)
Cytosine deaminase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0N1_AGRVS
cytosine deaminase
Cytosine deaminase {ECO:0000313|EMBL:ACM38429.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
berkeley_reactor_200306_biofilm_scaffold_35412_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(28017..28952)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Actinomyces sp. oral taxon 448 str. F0400 RepID=F9ECM7_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
berkeley_reactor_200306_biofilm_scaffold_35412_27
unknown

Not on your lists

comp(28949..29113)
DNA (165bp) protein (55aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_35412_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29298..30044
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035C5087
Transcriptional regulator {ECO:0000313|EMBL:EJJ31112.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_35412_29
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30041..30727
DNA (687bp) protein (229aa)
flavin reductase n=1 Tax=Rhizobium gallicum RepID=UPI00037260F6
flavin reductase domain-containing protein
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:ACS59573.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_35412_30
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30920..32023
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00035D5495
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJV11134.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
ABC transporter substrate-binding protein
Displaying items 1-30 of 319 in total

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