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berkeley_reactor_200306_biofilm_scaffold_139709

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Displaying items 1-30 of 214 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_139709_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..274
DNA (273bp) protein (91aa)
Transposase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UB14_9RHOB
Transposase {ECO:0000313|EMBL:EJW09794.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
transposase
berkeley_reactor_200306_biofilm_scaffold_139709_2
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

358..792
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Octadecabacter arcticus 238 RepID=M9RF16_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGI70338.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
berkeley_reactor_200306_biofilm_scaffold_139709_3
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(822..1454)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI0003718AF9
Uncharacterized protein {ECO:0000313|EMBL:EXI82575.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_139709_4
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1757..2737)
DNA (981bp) protein (327aa)
Oxidoreductase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FF34_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:ESX66289.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_139709_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2816..4282
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QC44_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KJC38034.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_139709_6
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4291..5487)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H282_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:EQM65752.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
Cyanate permease
berkeley_reactor_200306_biofilm_scaffold_139709_7
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5591..6376
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H250_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:EQM65753.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_139709_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6474..7259
DNA (786bp) protein (262aa)
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:CCV06894.1}; EC=1.1.1.69 {ECO:0000313|EMBL:CCV06894.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Gluconate 5-dehydrogenase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EQ78_9RHIZ
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_139709_9
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7313..11134
DNA (3822bp) protein (1274aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
Glycogen operon protein GlgX n=3 Tax=Burkholderia thailandensis RepID=Q2T6R4_BURTA
glgX; glycogen debranching enzyme GlgX
berkeley_reactor_200306_biofilm_scaffold_139709_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11339..13606
DNA (2268bp) protein (756aa)
Putative enzyme with a serine protease-like domain n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CH69_METED
Uncharacterized protein {ECO:0000313|EMBL:KFG67913.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
serine protease-like domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_139709_11
unknown

Not on your lists

13772..14662
DNA (891bp) protein (297aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_139709_12
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14705..15076
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7U7_9RHIZ
Msr0050 protein {ECO:0000313|EMBL:BAR63210.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_139709_13
bacterium YEK0313, Bacteria

Not on your lists

15206..16708
DNA (1503bp) protein (501aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUT3_9PROT
berkeley_reactor_200306_biofilm_scaffold_139709_14
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16801..17814
DNA (1014bp) protein (338aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Aldose 1-epimerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YT11_9RHIZ
aldose 1-epimerase
berkeley_reactor_200306_biofilm_scaffold_139709_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18115..19434
DNA (1320bp) protein (440aa)
Tat protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B2E82D
pectin lyase fold/virulence factor domain-containing protein
Pectin lyase fold/virulence factor domain-containing protein {ECO:0000313|EMBL:AJD40439.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
berkeley_reactor_200306_biofilm_scaffold_139709_16
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19537..20784)
DNA (1248bp) protein (416aa)
Asparagine synthase (Glutamine-hydrolyzing) putative n=1 Tax=Burkholderia sp. RPE64 RepID=R4WXL2_9BURK
asparagine synthase (Glutamine-hydrolyzing) putative
Asparagine synthase (Glutamine-hydrolyzing) putative {ECO:0000313|EMBL:BAN22762.1}; TaxID=758793 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
berkeley_reactor_200306_biofilm_scaffold_139709_17
unknown

Not on your lists

comp(20781..20984)
DNA (204bp) protein (68aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_139709_18
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20926..23769)
DNA (2844bp) protein (948aa)
Glycosyl transferase family 8 n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A183_CELGA
glycosyl transferase 8
Glycosyl transferase family 8 {ECO:0000313|EMBL:AEI11630.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
berkeley_reactor_200306_biofilm_scaffold_139709_19
bacterium YEK0313, Bacteria

Not on your lists

comp(23923..24927)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D3EDDE
L-asparaginase II {ECO:0000313|EMBL:CEJ10014.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
L-asparaginase II
berkeley_reactor_200306_biofilm_scaffold_139709_20
bacterium YEK0313, Bacteria

Not on your lists

25064..26515
DNA (1452bp) protein (484aa)
succinate-semialdehyde dehdyrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EC0A27
Glutarate-semialdehyde dehydrogenase DavD {ECO:0000313|EMBL:CEJ10338.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
succinate-semialdehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_139709_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26726..27313)
DNA (588bp) protein (196aa)
Pyroglutamyl-peptidase I {ECO:0000256|SAAS:SAAS00130640}; EC=3.4.19.3 {ECO:0000256|SAAS:SAAS00130640};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Peptidase C15, pyroglutamyl peptidase I n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217X4_RHOPB
peptidase C15, pyroglutamyl peptidase I
berkeley_reactor_200306_biofilm_scaffold_139709_22
bacterium YEK0313, Bacteria

Not on your lists

comp(27329..28336)
DNA (1008bp) protein (336aa)
membrane ATPase/protein kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3DD4A
Putative GTPase/MT1543 {ECO:0000313|EMBL:CEJ09955.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
argK; arginine/ornithine transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_139709_23
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28445..29476
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003723DD3
Uncharacterized protein {ECO:0000313|EMBL:EIZ86624.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_139709_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29588..30928
DNA (1341bp) protein (447aa)
Lysophospholipase L1 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I394_9RHIZ
Lysophospholipase L1 {ECO:0000313|EMBL:EHK52556.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative secreted protein
berkeley_reactor_200306_biofilm_scaffold_139709_25
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30976..33123)
DNA (2148bp) protein (716aa)
Methylmalonyl-CoA mutase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I4U0_AZOC5
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:BAF87770.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
methylmalonyl-CoA mutase
berkeley_reactor_200306_biofilm_scaffold_139709_26
unknown

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comp(33107..33529)
DNA (423bp) protein (141aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_139709_27
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33526..34908)
DNA (1383bp) protein (461aa)
methylmalonyl-CoA mutase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003666D64
McmB protein {ECO:0000313|EMBL:BAQ44989.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
methylmalonyl-CoA mutase
berkeley_reactor_200306_biofilm_scaffold_139709_28
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34946..35341)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UMS0_METS4
Uncharacterized protein {ECO:0000313|EMBL:KFG66592.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_139709_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35650..37146
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKJ9_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68542.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
berkeley_reactor_200306_biofilm_scaffold_139709_30
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37533..38030
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKK0_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68543.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying items 1-30 of 214 in total

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