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berkeley_reactor_200306_biofilm_scaffold_10683

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Displaying items 1-30 of 226 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_10683_1
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..843
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TE35_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04723.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
berkeley_reactor_200306_biofilm_scaffold_10683_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1027..1209
DNA (183bp) protein (61aa)
Uncharacterized protein R02474 n=7 Tax=Rhizobium meliloti RepID=Y2474_RHIME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG05202.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
berkeley_reactor_200306_biofilm_scaffold_10683_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1279..4398
DNA (3120bp) protein (1040aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036405D2
UvrD/REP helicase
berkeley_reactor_200306_biofilm_scaffold_10683_4
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4414..5217)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1P9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP61787.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10683_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5441..5848)
DNA (408bp) protein (136aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Ribonuclease VapC n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRN9_RHOP2
PilT protein-like
berkeley_reactor_200306_biofilm_scaffold_10683_6
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5848..6108)
DNA (261bp) protein (87aa)
Nitrogen regulatory protein NtrP n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TBA6_9RHIZ
Nitrogen regulatory protein NtrP {ECO:0000313|EMBL:ESR23683.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
SpoVT/AbrB-like protein
berkeley_reactor_200306_biofilm_scaffold_10683_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6267..7295
DNA (1029bp) protein (343aa)
Luciferase family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U844_METS4
luciferase family protein
Luciferase family protein {ECO:0000313|EMBL:ACA20548.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_10683_8
bacterium YEK0313, Bacteria

Not on your lists

7366..8040
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8Z5_9BRAD
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:CEJ12587.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10683_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8155..8508)
DNA (354bp) protein (118aa)
ArsC family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003488624
ArsC family transcriptional regulator {ECO:0000313|EMBL:KGM32480.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
arsenate reductase-like protein
berkeley_reactor_200306_biofilm_scaffold_10683_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8613..10232)
DNA (1620bp) protein (540aa)
Dehydrogenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIM4_9RHIZ
glucose-methanol-choline oxidoreductase
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:AHK46471.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
berkeley_reactor_200306_biofilm_scaffold_10683_11
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10258..11058)
DNA (801bp) protein (267aa)
UPI0003CF32EC related cluster n=1 Tax=unknown RepID=UPI0003CF32EC
2,3-dehydroadipyl-CoA hydratase {ECO:0000313|EMBL:ESW90157.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
enoyl-CoA hydratase
berkeley_reactor_200306_biofilm_scaffold_10683_12
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11055..12686)
DNA (1632bp) protein (544aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Burkholderia sp. H160 RepID=B5WDZ4_9BURK
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:EEA03440.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
glucose-methanol-choline oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_10683_13
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12688..13128)
DNA (441bp) protein (147aa)
MaoC-like dehydratase (EC:2.3.1.19)
MaoC-like dehydratase n=1 Tax=Oceanibaculum indicum P24 RepID=K2J771_9PROT
MaoC-like dehydratase {ECO:0000313|EMBL:EKE78951.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
berkeley_reactor_200306_biofilm_scaffold_10683_14
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13125..14087)
DNA (963bp) protein (321aa)
UPI0003CE0D6F related cluster n=1 Tax=unknown RepID=UPI0003CE0D6F
Dihydrodipicolinate synthase {ECO:0000313|EMBL:ESZ10702.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10683_15
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14150..15097)
DNA (948bp) protein (316aa)
UPI0003CDFDAE related cluster n=1 Tax=unknown RepID=UPI0003CDFDAE
Ribose ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW90155.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ribose ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_10683_16
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15171..16166)
DNA (996bp) protein (332aa)
Permease protein of sugar ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LI1_RHILO
sugar ABC transporter permease
Permease protein of sugar ABC transporter {ECO:0000313|EMBL:BAB48482.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_10683_17
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16180..17703)
DNA (1524bp) protein (508aa)
Aldehyde dehydrogenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIL7_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EHH06234.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_10683_18
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17714..19207)
DNA (1494bp) protein (498aa)
UPI0003CF1B7C related cluster n=1 Tax=unknown RepID=UPI0003CF1B7C
D-ribose transporter ATP binding protein {ECO:0000313|EMBL:ESZ10697.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
sugar ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_10683_19
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19262..20086)
DNA (825bp) protein (275aa)
UPI0003CE2957 related cluster n=1 Tax=unknown RepID=UPI0003CE2957
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:ESZ10696.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
fabG; 3-ketoacyl-ACP reductase
berkeley_reactor_200306_biofilm_scaffold_10683_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20086..21306)
DNA (1221bp) protein (407aa)
Racemase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YIL4_9RHIZ
Racemase {ECO:0000313|EMBL:EHH06231.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
racemase
berkeley_reactor_200306_biofilm_scaffold_10683_21
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21498..22526
DNA (1029bp) protein (343aa)
Glucose-resistance amylase regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98LH5_RHILO
glucose-resistance amylase regulator
Glucose-resistance amylase regulator {ECO:0000313|EMBL:BAB48488.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_10683_22
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22535..22951)
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JA83_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:KGM31857.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_10683_23
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23082..23564
DNA (483bp) protein (161aa)
AsnC family transcriptional regulator n=1 Tax=Pseudomonas fragi RepID=UPI0002893B40
Regulatory protein AsnC/Lrp {ECO:0000313|EMBL:EMI08290.1}; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
AsnC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_10683_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23673..25199
DNA (1527bp) protein (509aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXR9_9RHIZ
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIM28761.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
malonyl-CoA synthase
berkeley_reactor_200306_biofilm_scaffold_10683_25
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25310..25873
DNA (564bp) protein (188aa)
hexulose-6-phosphate isomerase (EC:5.-.-.-)
Hexulose-6-phosphate isomerase {ECO:0000313|EMBL:ABC22168.1}; EC=5.-.-.- {ECO:0000313|EMBL:ABC22168.1};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FADEA6
berkeley_reactor_200306_biofilm_scaffold_10683_26
unknown

Not on your lists

comp(25944..26165)
DNA (222bp) protein (74aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_10683_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26439..26852
DNA (414bp) protein (138aa)
SEC-independent protein translocase TatC n=2 Tax=Brucella RepID=D1D0Q9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC73925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SEC-independent protein translocase protein TatC
berkeley_reactor_200306_biofilm_scaffold_10683_28
Erwinia billingiae, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27059..27811
DNA (753bp) protein (251aa)
Transcriptional regulator, GntR family protein n=1 Tax=Erwinia billingiae (strain Eb661) RepID=D8MMG7_ERWBE
GntR family transcriptional regulator
Transcriptional regulator, GntR family protein {ECO:0000313|EMBL:CAX58051.1}; TaxID=634500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia billingiae (strain Eb661).;"
berkeley_reactor_200306_biofilm_scaffold_10683_29
Erwinia billingiae, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27808..28731
DNA (924bp) protein (308aa)
Ribokinase n=1 Tax=Erwinia billingiae (strain Eb661) RepID=D8MMG6_ERWBE
ribokinase
Ribokinase {ECO:0000313|EMBL:CAX58050.1}; TaxID=634500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia billingiae (strain Eb661).;"
berkeley_reactor_200306_biofilm_scaffold_10683_30
Erwinia typographi, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28728..29582
DNA (855bp) protein (285aa)
Photosystem I assembly BtpA n=1 Tax=Erwinia billingiae (strain Eb661) RepID=D8MMG5_ERWBE
BtpA family membrane complex biogenesis protein {ECO:0000313|EMBL:KGT94310.1}; TaxID=371042 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia typographi.;"
Photosystem I assembly BtpA
Displaying items 1-30 of 226 in total

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