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berkeley_reactor_200306_biofilm_scaffold_28919

Search features with annotation key words

Displaying items 1-30 of 132 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_28919_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(386..1816)
DNA (1431bp) protein (477aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. AP16 RepID=J2WBE7_9RHIZ
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJK79945.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
aldehyde dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_28919_2
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1853..2926)
DNA (1074bp) protein (358aa)
UPI0003CE654E related cluster n=1 Tax=unknown RepID=UPI0003CE654E
Putative spermidine/putrescine transporter subunit ATP-binding component of ABC superfamily tranporter {ECO:0000313|EMBL:CDX15552.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_28919_3
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2916..3530)
DNA (615bp) protein (205aa)
XRE family transcriptional regulator n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HV60_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:ESZ34906.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
cupin
berkeley_reactor_200306_biofilm_scaffold_28919_4
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3844..4923)
DNA (1080bp) protein (360aa)
Extracellular solute-binding protein family 1 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCZ9_MESOW
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:AEH90106.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
berkeley_reactor_200306_biofilm_scaffold_28919_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4944..5786)
DNA (843bp) protein (281aa)
Spermidine/putrescine ABC transporter n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J799_HYPSM
potI; Spermidine/putrescine ABC transporter
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:CCB67209.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_28919_6
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5783..6673)
DNA (891bp) protein (297aa)
UPI0003CEBCBA related cluster n=1 Tax=unknown RepID=UPI0003CEBCBA
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:ESY73245.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
binding-protein-dependent transport system inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_28919_7
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7006..7698)
DNA (693bp) protein (231aa)
UPI0003CFCAE3 related cluster n=1 Tax=unknown RepID=UPI0003CFCAE3
Resolvase {ECO:0000313|EMBL:ESZ19612.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Resolvase domain
berkeley_reactor_200306_biofilm_scaffold_28919_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8220..9935)
DNA (1716bp) protein (572aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KJB94720.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KJB94720.1};; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative dihydroxy-acid dehydratase (EC:4.2.1.9)
L-arabonate dehydratase AraC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EHN7_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_28919_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9954..11393)
DNA (1440bp) protein (480aa)
Succinate-semialdehyde dehydrogenase GabD {ECO:0000313|EMBL:EYR80248.1}; EC=1.2.1.79 {ECO:0000313|EMBL:EYR80248.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gabD; Succinate-semialdehyde dehydrogenase [NADP+] (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase GabD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJN2_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_28919_10
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11405..13288)
DNA (1884bp) protein (628aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:ESR27180.1}; EC=2.2.1.6 {ECO:0000313|EMBL:ESR27180.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
Acetolactate synthase large subunit n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RVW3_9RHIZ
conserved protein of unknown function[Include thiamine pyrophosphate enzyme, C-terminal TPP binding domain]
berkeley_reactor_200306_biofilm_scaffold_28919_11
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13346..14134)
DNA (789bp) protein (263aa)
Transcriptional regulator, IclR family n=1 Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IJK9_ALIAT
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEJ44722.1}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
berkeley_reactor_200306_biofilm_scaffold_28919_12
Mycobacterium leprae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14498..15559
DNA (1062bp) protein (354aa)
RbsB n=3 Tax=Mycobacterium leprae RepID=Q79DH8_MYCLR
D-ribose-binding protein
Putative D-ribose-binding protein {ECO:0000313|EMBL:CAC29906.1}; TaxID=272631 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium leprae (strain TN).;"
berkeley_reactor_200306_biofilm_scaffold_28919_13
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15628..16563
DNA (936bp) protein (312aa)
Putative transporter protein n=1 Tax=Mycobacterium leprae (strain Br4923) RepID=B8ZUE4_MYCLB
transporter protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:CDR04533.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
berkeley_reactor_200306_biofilm_scaffold_28919_14
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16612..17739
DNA (1128bp) protein (376aa)
NADH-dependent dihydrogenase n=1 Tax=Clostridium sp. D5 RepID=F0YUE1_9CLOT
NADH-dependent dihydrogenase {ECO:0000313|EMBL:EGB94511.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
oxidoreductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_28919_15

Not on your lists

17748..18581
DNA (834bp) protein (278aa)
Isomerase domain-containing protein n=1 Tax=uncultured marine bacterium 1n22 RepID=D2DIR1_9BACT
Isomerase domain-containing protein {ECO:0000313|EMBL:ACX49749.1}; TaxID=662659 species="Bacteria; environmental samples.;" source="uncultured marine bacterium 1n22.;"
xylose isomerase
berkeley_reactor_200306_biofilm_scaffold_28919_16
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

18578..19369
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003655C29
ABC transporter
Tax=RBG_16_Spirochaete_67_19_curated
berkeley_reactor_200306_biofilm_scaffold_28919_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19379..21529)
DNA (2151bp) protein (717aa)
Trimethylamine dehydrogenase {ECO:0000313|EMBL:AEG49541.1}; EC=1.5.8.2 {ECO:0000313|EMBL:AEG49541.1};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
trimethylamine dehydrogenase (EC:1.5.8.2)
Trimethylamine dehydrogenase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ETP6_SPHCR
berkeley_reactor_200306_biofilm_scaffold_28919_18
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21839..22735)
DNA (897bp) protein (299aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KLP0_MESAW
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:AGB45013.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_28919_19
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22723..23526)
DNA (804bp) protein (268aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KI49_MESAW
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:AGB45012.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_28919_20
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23831..24817)
DNA (987bp) protein (329aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KJ21_MESAW
NMT1/THI5 like domain protein {ECO:0000313|EMBL:CDX46644.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
berkeley_reactor_200306_biofilm_scaffold_28919_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25147..26202)
DNA (1056bp) protein (352aa)
LysR-family transcriptional regulator n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IIW2_AZOC5
lysR; LysR family transcriptional regulator
LysR-family transcriptional regulator {ECO:0000313|EMBL:BAF86202.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_28919_22
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26255..27106
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003672DE1
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL56062.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_28919_23
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27103..27897
DNA (795bp) protein (265aa)
ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI000365F661
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAL75061.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_28919_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27932..28945
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036242A7
Uncharacterized protein {ECO:0000313|EMBL:EKS27796.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NMT1/THI5 like domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_28919_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28970..29485)
DNA (516bp) protein (172aa)
Metallophosphoesterase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IM00_METNO
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ACL56344.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_28919_26
Cylindrobasidium torrendii, Cylindrobasidium, Corticiales, Agaricomycetes, Basidiomycota, Fungi

Not on your lists

comp(29680..31290)
DNA (1611bp) protein (537aa)
Putative uncharacterized protein n=1 Tax=Volvox carteri RepID=D8U0Z1_VOLCA
Uncharacterized protein {ECO:0000313|EMBL:KIY63595.1}; TaxID=1314674 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Corticiales; Corticiaceae; Cylindrobasidium.;" source="Cylindrobasidium torrendii FP15055 ss-10.;"
RNA polymerase sigma factor
berkeley_reactor_200306_biofilm_scaffold_28919_27
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31290..32546)
DNA (1257bp) protein (419aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSN0_9RHIZ
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:EWY37259.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
signal peptide
berkeley_reactor_200306_biofilm_scaffold_28919_28
unknown

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comp(32642..35398)
DNA (2757bp) protein (919aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_28919_29
unknown

Not on your lists

comp(35385..38759)
DNA (3375bp) protein (1125aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_28919_30
unknown

Not on your lists

comp(38763..40964)
DNA (2202bp) protein (734aa)

This feature has no annotations

Displaying items 1-30 of 132 in total

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