name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_112583_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3..110
|
UPI0003CF7C8A related cluster n=1 Tax=unknown RepID=UPI0003CF7C8A
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW86240.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_2
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
316..924
|
membrane protein n=1 Tax=Rhizobium giardinii RepID=UPI00036CFCC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAK68885.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(949..1899)
|
Aldo/keto reductase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6R2_AZOS1
Alcohol dehydrogenase {ECO:0000313|EMBL:KFG68565.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
aldo/keto reductase
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_4
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1985..3484)
|
Histidine ammonia-lyase {ECO:0000256|SAAS:SAAS00083026}; EC=4.3.1.3 {ECO:0000256|SAAS:SAAS00083026};; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
HutH n=1 Tax=Pseudomonas nitroreducens RepID=UPI000308398C
putative histidine/phenylalanine ammonia-lyase
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3563..4012)
|
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IE88_METNO
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ACL57634.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4060..4473)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003740355
cysG; uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase domain protein {ECO:0000313|EMBL:ADZ71956.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_7
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4719..5063)
|
RNA-binding S4 n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CSV5_9RHOB
RNA-binding S4 domain-containing protein
Tax=BJP_08E140C01_Roseovarius_63_250
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_8
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5068..8664)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003820153
Helicase domain protein {ECO:0000313|EMBL:ACL56711.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
helicase domain-containing protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_9
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8969..9751
|
DeoR family transcriptional regulator n=2 Tax=Rhodospirillum rubrum RepID=G2TF40_RHORU
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABC21980.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_10
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9760..10893
|
Putative permease of the major facilitator superfamily MFS-1 n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AT13_AZOBR
putative permease of the major facilitator superfamily MFS-1
Putative permease of the major facilitator superfamily MFS-1 {ECO:0000313|EMBL:CCD00574.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10931..11572)
|
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FCR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX67296.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
arginine exporter protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_12
unknown
|
Not on your lists |
comp(11569..11874)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_112583_13
unknown
|
Not on your lists |
comp(12090..12332)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_112583_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12708..13724)
|
Rranscriptional regulator, AraC family n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QQD7_9BRAD
Rranscriptional regulator, AraC family {ECO:0000313|EMBL:EGP06551.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14176..15330
|
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRX6_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD09034.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_16
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15341..16015)
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000371454C
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG08893.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
GntR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_17
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16233..16820
|
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1E8_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74477.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_18
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16813..18603
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003609A79
Flavin reductase {ECO:0000313|EMBL:ESZ02091.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
flavin reductase domain-containing protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_19
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18619..19653
|
hypothetical protein n=2 Tax=Xanthobacteraceae RepID=UPI000382B190
monooxygenase
Monooxygenase {ECO:0000313|EMBL:BAI74474.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19666..21141
|
betB; betaine-aldehyde dehydrogenase (EC:1.2.1.8)
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:BAI74473.1}; EC=1.2.1.8 {ECO:0000313|EMBL:BAI74473.1};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Betaine-aldehyde dehydrogenase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1E4_AZOS1
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_21
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21153..21467
|
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1E3_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74472.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_22
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21531..22553
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003657CC8
Putative polyamine ABC transporter, periplasmic polyamine-binding protein {ECO:0000313|EMBL:EEE07544.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
bacterial extracellular solute-binding family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_23
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22891..23757
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003704C94
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:BAK77355.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_24
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23762..24559
|
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000376B019
Polyamine ABC transporter, permease protein {ECO:0000313|EMBL:ESR23751.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
potC; spermidine/putrescine transport system permease protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_25
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24556..25644
|
Putative ABC-transporter ATP-binding protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W248_RHISN
ABC transporter ATP-binding protein
Putative ABC-transporter ATP-binding protein {ECO:0000313|EMBL:ACP23148.1}; Spermidine/putrescine transport ATP-binding protein potA {ECO:0000313|EMBL:AAQ87170.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25710..26387
|
HAD family hydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031EEE2F
HAD family hydrolase
HAD family hydrolase {ECO:0000313|EMBL:AHX15023.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_27
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26398..27072
|
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S6J8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50129.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_28
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27161..28945
|
Putative Rieske iron-sulfur protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AVZ2_PSERE
Uncharacterized protein {ECO:0000313|EMBL:KGM35479.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative Rieske iron-sulfur protein
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_29
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28997..29881)
|
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037649A4
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KGM35472.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
potI; putrescine ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_112583_30
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29878..30792)
|
Binding-protein dependent transport system inner membrane protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LMN9_9PROT
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KGM35473.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
binding-protein dependent transport system inner membrane protein
|