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berkeley_reactor_200306_biofilm_scaffold_79982

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_79982_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..231
DNA (231bp) protein (77aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Cobalamin synthase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IRE0_METNO
cobalamin 5'-phosphate synthase
berkeley_reactor_200306_biofilm_scaffold_79982_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247..495
DNA (249bp) protein (83aa)
Fe-S oxidoreductase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035C3CB9
Uncharacterized protein {ECO:0000313|EMBL:KFC63936.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_79982_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

641..1507
DNA (867bp) protein (289aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ABE39282.1}; EC=1.1.1.31 {ECO:0000313|EMBL:ABE39282.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000302DA5A
berkeley_reactor_200306_biofilm_scaffold_79982_4
unknown

Not on your lists

comp(1515..1724)
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_79982_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1848..2294)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036C6F41
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:AGH50090.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
berkeley_reactor_200306_biofilm_scaffold_79982_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2364..3101
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JBE0_AGRRK
Threonine dehydratase {ECO:0000313|EMBL:KFC62177.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_79982_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3294..4070
DNA (777bp) protein (259aa)
glyoxalase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000378D377
cfp30B: 27 kDa antigen Cfp30B
Cfp30B: 27 kDa antigen Cfp30B {ECO:0000313|EMBL:AFL53828.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
berkeley_reactor_200306_biofilm_scaffold_79982_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4077..5000)
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=2 Tax=Rhizobium meliloti RepID=F6C0V5_SINMB
Transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEG08932.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
berkeley_reactor_200306_biofilm_scaffold_79982_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5112..5858
DNA (747bp) protein (249aa)
UPI0003CECA13 related cluster n=1 Tax=unknown RepID=UPI0003CECA13
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:CDX22218.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
short-chain alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_79982_10
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

5957..6961
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CVJ2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFQ24183.1}; TaxID=584708 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas.;" source="Aminomonas paucivorans DSM 12260.;"
berkeley_reactor_200306_biofilm_scaffold_79982_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7031..7816)
DNA (786bp) protein (262aa)
paaG; 1,2-epoxyphenylacetyl-CoA isomerase (EC:5.3.3.18)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN95_9RHIZ
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EIM25437.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_79982_12
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7874..8755)
DNA (882bp) protein (294aa)
UPI0003CFA2B6 related cluster n=1 Tax=unknown RepID=UPI0003CFA2B6
Uncharacterized protein {ECO:0000313|EMBL:ESZ20676.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_79982_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8856..10025)
DNA (1170bp) protein (390aa)
Sarcosine oxidase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UAV7_METS4
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:KFC63908.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
solA; N-methyltryptophan oxidase
berkeley_reactor_200306_biofilm_scaffold_79982_14
bacterium YEK0313, Bacteria

Not on your lists

comp(10055..11083)
DNA (1029bp) protein (343aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A667_STAND
molybdenum cofactor biosynthesis protein A
berkeley_reactor_200306_biofilm_scaffold_79982_15
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11219..11593
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035DD407
Uncharacterized protein {ECO:0000313|EMBL:EGP08216.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_79982_16
unknown

Not on your lists

comp(11596..11970)
DNA (375bp) protein (125aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_79982_17
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12160..14367
DNA (2208bp) protein (736aa)
NHL repeat containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIQ3_FLUTR
NHL repeat containing protein
NHL repeat containing protein {ECO:0000313|EMBL:AEA46015.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
berkeley_reactor_200306_biofilm_scaffold_79982_18
bacterium YEK0313, Bacteria

Not on your lists

comp(14391..14993)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003753BCC
Putative L,D-transpeptidase ErfK/SrfK {ECO:0000313|EMBL:CEJ15692.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ErfK/YbiS/YcfS/YnhG family protein
berkeley_reactor_200306_biofilm_scaffold_79982_19
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15165..16784)
DNA (1620bp) protein (540aa)
Multidrug efflux transporter protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8P5_HYPSM
rmrB; multidrug efflux transporter protein
Multidrug efflux transporter protein {ECO:0000313|EMBL:CCB63625.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_79982_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16812..18050)
DNA (1239bp) protein (413aa)
Secretion protein HlyD family protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8P4_HYPSM
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:CCB63623.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_79982_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18162..18809
DNA (648bp) protein (216aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036B2920
Transcriptional regulator {ECO:0000313|EMBL:EJJ26750.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
TetR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_79982_22
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19058..20110)
DNA (1053bp) protein (351aa)
Aldo/keto reductase n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W6L7_KINRD
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABS02456.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
berkeley_reactor_200306_biofilm_scaffold_79982_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20737..21159
DNA (423bp) protein (141aa)
Transcription elongation factor n=1 Tax=Microvirga sp. WSM3557 RepID=I4YX54_9RHIZ
Transcription elongation factor {ECO:0000313|EMBL:EIM28546.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
GreA/GreB family elongation factor
berkeley_reactor_200306_biofilm_scaffold_79982_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21234..21524
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXW4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54440.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
addiction module killer protein
berkeley_reactor_200306_biofilm_scaffold_79982_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21524..21814
DNA (291bp) protein (97aa)
Addiction module antidote protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXW3_9RHIZ
Addiction module antidote protein {ECO:0000313|EMBL:EHK54439.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_79982_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21885..22130
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G1D2_RHIML
Putative uncharacterized protein {ECO:0000313|EMBL:EHK76904.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
relEB; translation repressor RelE/RelB/StbE
berkeley_reactor_200306_biofilm_scaffold_79982_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22480..23190)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PYQ2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:AHE52332.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
ankyrin repeat-containing protein
berkeley_reactor_200306_biofilm_scaffold_79982_28
unknown

Not on your lists

23203..23868
DNA (666bp) protein (222aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_79982_29
bacterium YEK0313, Bacteria

Not on your lists

comp(23721..26342)
DNA (2622bp) protein (874aa)
excinuclease ABC subunit B n=1 Tax=Methyloferula stellata RepID=UPI0003667B85
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
excinuclease ABC subunit B
berkeley_reactor_200306_biofilm_scaffold_79982_30
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26517..27626)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Newport str. CVM 37978 RepID=I9UDR5_SALNE
Uncharacterized protein {ECO:0000313|EMBL:AIA61576.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
conserved protein of unknown function
Displaying items 1-30 of 114 in total

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