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berkeley_reactor_200306_biofilm_scaffold_56793

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Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_56793_trna_1
unknown

Not on your lists

277..350
DNA (74bp)
transferRNA Met
berkeley_reactor_200306_biofilm_scaffold_56793_1
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378..1232)
DNA (855bp) protein (285aa)
Transcriptional regulator, AraC family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESG5_METSB
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACK49855.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_56793_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1380..2075
DNA (696bp) protein (232aa)
O-methyltransferase family 3 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESG6_METSB
O-methyltransferase family protein
O-methyltransferase family 3 {ECO:0000313|EMBL:ACK49856.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_56793_3
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2075..2821
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H3B7_9SPHN
FAD binding siderophore-interacting domain-containing protein {ECO:0000313|EMBL:GAJ30701.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56793_4
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2908..3672)
DNA (765bp) protein (255aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Rhizobium sp. CF080 RepID=J3B4B8_9RHIZ
Sugar phosphate isomerase {ECO:0000313|EMBL:KFL31236.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56793_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3706..4182)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 PF0_9RHIZ">RepID=J1SPF0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ27093.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_56793_6
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4263..4751)
DNA (489bp) protein (163aa)
Lactoylglutathione lyase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRZ5_9RHIZ
Lactoylglutathione lyase {ECO:0000313|EMBL:ESX82337.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
lactoylglutathione lyase
berkeley_reactor_200306_biofilm_scaffold_56793_7
RBG_13_Chloroflexi_60_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(4833..5300)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Paenibacillus daejeonensis RepID=UPI000376B82B
lactoylglutathione lyase
Tax=RBG_13_Chloroflexi_60_9_curated
berkeley_reactor_200306_biofilm_scaffold_56793_8
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(5300..5800)
DNA (501bp) protein (167aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHW6_THET1
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACZ43337.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
berkeley_reactor_200306_biofilm_scaffold_56793_9
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(5831..6820)
DNA (990bp) protein (330aa)
Aldo/keto reductase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RAD8_SPISS
aldo/keto reductase
Tax=RBG_13_Spirochaetes_68_11_curated
berkeley_reactor_200306_biofilm_scaffold_56793_10
unknown

Not on your lists

comp(6897..7298)
DNA (402bp) protein (134aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_56793_11
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7295..8146)
DNA (852bp) protein (284aa)
ABC transporter permease n=1 Tax=Nocardiopsis synnemataformans RepID=UPI0003464A45
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI00910.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
berkeley_reactor_200306_biofilm_scaffold_56793_12
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8143..9087)
DNA (945bp) protein (315aa)
ABC transporter permease n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZP52_9PSEU
ABC transporter permease {ECO:0000313|EMBL:KDN22150.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
transmembrane sugar transporter
berkeley_reactor_200306_biofilm_scaffold_56793_13
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9144..10487)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L5G5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH19062.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
sugar ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_56793_14
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(10571..11449)
DNA (879bp) protein (293aa)
sugar ABC transporter permease n=1 Tax=Humibacter albus RepID=UPI0003B5F396
yurM; sugar ABC transporter permease
Tax=GWF2_WOR_2_43_52_curated
berkeley_reactor_200306_biofilm_scaffold_56793_15
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(11466..12392)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Humibacter albus RepID=UPI0003B5EFCE
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACZ41747.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
berkeley_reactor_200306_biofilm_scaffold_56793_16
Paenibacillus sp. P22, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12450..13706)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Humibacter albus RepID=UPI0003B323ED
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDN43813.1}; TaxID=483908 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. P22.;"
family 1 extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_56793_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14221..15282
DNA (1062bp) protein (354aa)
transcriptional regulator, LacI family (EC:5.1.1.1)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BWQ7_RHILV
Transcriptional regulator {ECO:0000313|EMBL:EJC70975.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
berkeley_reactor_200306_biofilm_scaffold_56793_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15429..16283)
DNA (855bp) protein (285aa)
LysR family transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003747C95
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF69727.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_56793_19
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16452..17972
DNA (1521bp) protein (507aa)
MFS permease n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDK6_RHIRD
MFS transporter {ECO:0000313|EMBL:KJF74891.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
MFS permease
berkeley_reactor_200306_biofilm_scaffold_56793_20
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18027..18503
DNA (477bp) protein (159aa)
Fur family transcriptional regulator n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7S0A1_PROA4
Fur family transcriptional regulator
Fur family transcriptional regulator {ECO:0000313|EMBL:AFV90738.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
berkeley_reactor_200306_biofilm_scaffold_56793_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18493..20673
DNA (2181bp) protein (727aa)
Catalase-peroxidase {ECO:0000255|HAMAP-Rule:MF_01961}; Short=CP {ECO:0000255|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000255|HAMAP-Rule:MF_01961};; Peroxidase/catalase {ECO:0000255|HAMAP-Rule:MF_01961}; Flags: Precursor;; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Catalase-peroxidase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=KATG_AZOC5
heme catalase
berkeley_reactor_200306_biofilm_scaffold_56793_22
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20813..21706)
DNA (894bp) protein (298aa)
LysR family transcriptional regulator (EC:4.2.1.1)
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACI52543.1}; EC=4.2.1.1 {ECO:0000313|EMBL:ACI52543.1};; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Transcriptional regulator, LysR family n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHR5_GLUDA
berkeley_reactor_200306_biofilm_scaffold_56793_23
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21804..22661
DNA (858bp) protein (286aa)
short-chain dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000381EACE
Short-chain dehydrogenase {ECO:0000313|EMBL:KKC24184.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_56793_24
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22675..23733)
DNA (1059bp) protein (353aa)
Spermidine/putrescine import ATP-binding protein potA n=1 Tax=Burkholderia sp. RPE64 RepID=R4X0N3_9BURK
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDR43208.1}; Sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDY79299.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
spermidine/putrescine import ATP-binding protein potA
berkeley_reactor_200306_biofilm_scaffold_56793_25
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23741..24787)
DNA (1047bp) protein (349aa)
UPI0003D02C0B related cluster n=1 Tax=unknown RepID=UPI0003D02C0B
ABC transporter permease {ECO:0000313|EMBL:ESZ21609.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_56793_26
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24784..25917)
DNA (1134bp) protein (378aa)
UPI0003D020F6 related cluster n=1 Tax=unknown RepID=UPI0003D020F6
Uncharacterized protein {ECO:0000313|EMBL:ESZ21608.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
putative ABC transporter permease protein
berkeley_reactor_200306_biofilm_scaffold_56793_27
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26028..27506)
DNA (1479bp) protein (493aa)
UPI0003CFF6EE related cluster n=1 Tax=unknown RepID=UPI0003CFF6EE
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ21607.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
putative ABC transporter solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_56793_28
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27711..29159
DNA (1449bp) protein (483aa)
mannitol dehydrogenase n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376824
Mannitol dehydrogenase {ECO:0000313|EMBL:KEA55327.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
mannitol dehydrogenase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_56793_29
Marinomonas sp. MED121, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29282..30166)
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y7A1_9GAMM
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EAQ66963.1}; TaxID=314277 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. MED121.;"
LysR family transcriptional regulator
Displaying items 1-30 of 90 in total

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