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berkeley_reactor_200306_biofilm_scaffold_54892

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_54892_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1063
DNA (1062bp) protein (354aa)
secretin n=1 Tax=Afipia birgiae RepID=UPI0002F2335A
Secretin {ECO:0000313|EMBL:KIZ45156.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
type II and III secretion system protein
berkeley_reactor_200306_biofilm_scaffold_54892_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1178..2434)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003677053
Phosphate-selective porin {ECO:0000313|EMBL:EIM25641.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
outer membrane protein 1
berkeley_reactor_200306_biofilm_scaffold_54892_3
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3167..4507)
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=513051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD1.;"
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036390D9
integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_54892_4
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4504..5196)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003711F2A
Two component transcriptional regulator, winged helix family protein {ECO:0000313|EMBL:EKS71264.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
two component transcriptional regulator, winged helix family
berkeley_reactor_200306_biofilm_scaffold_54892_5
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5776..7131
DNA (1356bp) protein (452aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QNG8_METTR
Putative accessory protein to ABC-type macrolide transport protein MacB {ECO:0000313|EMBL:CCD90740.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
accessory protein to ABC-type macrolide transport protein MacB
berkeley_reactor_200306_biofilm_scaffold_54892_6
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7134..9110
DNA (1977bp) protein (659aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
ABC transporter related protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QNG7_METTR
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_54892_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9283..10647
DNA (1365bp) protein (455aa)
Secretion protein HlyD n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXW7_RHOP2
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:ABD06943.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
berkeley_reactor_200306_biofilm_scaffold_54892_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10659..13802
DNA (3144bp) protein (1048aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBS5_MESCW
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ADV12000.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
berkeley_reactor_200306_biofilm_scaffold_54892_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13841..15361
DNA (1521bp) protein (507aa)
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217K7_RHOPB
RND efflux system outer membrane lipoprotein NodT
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABD87429.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
berkeley_reactor_200306_biofilm_scaffold_54892_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15449..16342)
DNA (894bp) protein (298aa)
UPI0003D00F9F related cluster n=1 Tax=unknown RepID=UPI0003D00F9F
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ22156.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_54892_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16681..17676
DNA (996bp) protein (332aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HPV4_9RHIZ
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJN02201.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ribose ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_54892_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17754..19274
DNA (1521bp) protein (507aa)
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:CDX39221.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX39221.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI00035E1148
ribose ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_54892_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19319..20299
DNA (981bp) protein (327aa)
ABC transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035CDF44
ABC transporter {ECO:0000313|EMBL:KDP71806.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_54892_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20329..21345
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F2EB9
Zinc-type alcohol dehydrogenase protein {ECO:0000313|EMBL:KEC72998.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
alcohol dehydrogenase GroES domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_54892_15
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21537..22391)
DNA (855bp) protein (285aa)
Putative ATPase n=1 Tax=Sphingobium sp. AP49 RepID=J2WKP3_9SPHN
Putative ATPase {ECO:0000313|EMBL:EJK83260.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
ATPase AAA
berkeley_reactor_200306_biofilm_scaffold_54892_16
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22580..22933
DNA (354bp) protein (118aa)
Regulatory protein ArsR n=1 Tax=Frankia sp. CN3 RepID=G6HN47_9ACTO
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADP79484.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
berkeley_reactor_200306_biofilm_scaffold_54892_17
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22937..23443
DNA (507bp) protein (169aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J534_FRASU
Activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADP79485.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
berkeley_reactor_200306_biofilm_scaffold_54892_18
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23443..24069
DNA (627bp) protein (209aa)
deaminase n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036947DD
Deaminase {ECO:0000313|EMBL:KII00011.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
deaminase-reductase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_54892_19
unknown

Not on your lists

comp(24048..24341)
DNA (294bp) protein (98aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_54892_20
unknown

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24410..24589
DNA (180bp) protein (60aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_54892_21
unknown

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24790..25023
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_54892_22
unknown

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25221..25403
DNA (183bp) protein (61aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_54892_23
Microcystis sp. T1-4, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25447..26820
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Microcystis sp. T1-4 RepID=I4ICR2_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:CCI32086.1}; TaxID=1160279 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis sp. T1-4.;"
putative methylase
berkeley_reactor_200306_biofilm_scaffold_54892_24
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26839..27375)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035E39E6
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:KJR63440.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
cyclic nucleotide-binding protein
berkeley_reactor_200306_biofilm_scaffold_54892_25
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27400..30291)
DNA (2892bp) protein (964aa)
ATP-binding cassette subfamily B n=1 Tax=Oceanibaculum indicum P24 RepID=K2JU92_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJR63441.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_54892_26
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30281..32473)
DNA (2193bp) protein (731aa)
ABC transporter related n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCL5_9BRAD
ABC transporter {ECO:0000313|EMBL:KJC58937.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_54892_27
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32517..33770)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003607D91
Uncharacterized protein {ECO:0000313|EMBL:KJR63442.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
membrane-fusion protein
berkeley_reactor_200306_biofilm_scaffold_54892_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33912..36152)
DNA (2241bp) protein (747aa)
DNA topoisomerase IV subunit alpha (EC:5.99.1.3)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
DNA topoisomerase 4 subunit A n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAE2_STAND
berkeley_reactor_200306_biofilm_scaffold_54892_29
unknown

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comp(36290..36646)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJH0_METS4
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_54892_30
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36711..37436)
DNA (726bp) protein (242aa)
DNA repair protein RecO n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LUK5_METRJ
DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
Displaying items 1-30 of 140 in total

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