name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_54892_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..1063
|
secretin n=1 Tax=Afipia birgiae RepID=UPI0002F2335A
Secretin {ECO:0000313|EMBL:KIZ45156.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
type II and III secretion system protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1178..2434)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003677053
Phosphate-selective porin {ECO:0000313|EMBL:EIM25641.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
outer membrane protein 1
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_3
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3167..4507)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=513051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD1.;"
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036390D9
integral membrane sensor signal transduction histidine kinase
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_4
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4504..5196)
|
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003711F2A
Two component transcriptional regulator, winged helix family protein {ECO:0000313|EMBL:EKS71264.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
two component transcriptional regulator, winged helix family
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_5
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5776..7131
|
Efflux transporter, RND family, MFP subunit n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QNG8_METTR
Putative accessory protein to ABC-type macrolide transport protein MacB {ECO:0000313|EMBL:CCD90740.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
accessory protein to ABC-type macrolide transport protein MacB
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_6
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7134..9110
|
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
ABC transporter related protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QNG7_METTR
ABC transporter-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9283..10647
|
Secretion protein HlyD n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXW7_RHOP2
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:ABD06943.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_8
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10659..13802
|
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBS5_MESCW
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ADV12000.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
hydrophobe/amphiphile efflux-1 (HAE1) family transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13841..15361
|
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217K7_RHOPB
RND efflux system outer membrane lipoprotein NodT
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABD87429.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15449..16342)
|
UPI0003D00F9F related cluster n=1 Tax=unknown RepID=UPI0003D00F9F
GntR family transcriptional regulator {ECO:0000313|EMBL:ESZ22156.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
GntR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16681..17676
|
ABC-type sugar transport system, periplasmic component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HPV4_9RHIZ
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJN02201.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ribose ABC transporter substrate-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17754..19274
|
Ribose import ATP-binding protein RbsA 2 {ECO:0000313|EMBL:CDX39221.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX39221.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter ATP-binding protein n=1 Tax=Rhizobium loti RepID=UPI00035E1148
ribose ABC transporter ATP-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19319..20299
|
ABC transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035CDF44
ABC transporter {ECO:0000313|EMBL:KDP71806.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
sugar ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20329..21345
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F2EB9
Zinc-type alcohol dehydrogenase protein {ECO:0000313|EMBL:KEC72998.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
alcohol dehydrogenase GroES domain-containing protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_15
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21537..22391)
|
Putative ATPase n=1 Tax=Sphingobium sp. AP49 RepID=J2WKP3_9SPHN
Putative ATPase {ECO:0000313|EMBL:EJK83260.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
ATPase AAA
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_16
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
22580..22933
|
Regulatory protein ArsR n=1 Tax=Frankia sp. CN3 RepID=G6HN47_9ACTO
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADP79484.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_17
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
22937..23443
|
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J534_FRASU
Activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ADP79485.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_18
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
23443..24069
|
deaminase n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036947DD
Deaminase {ECO:0000313|EMBL:KII00011.1}; TaxID=183763 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
deaminase-reductase domain-containing protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_19
unknown
|
Not on your lists |
comp(24048..24341)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_54892_20
unknown
|
Not on your lists |
24410..24589
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_54892_21
unknown
|
Not on your lists |
24790..25023
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_54892_22
unknown
|
Not on your lists |
25221..25403
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_54892_23
Microcystis sp. T1-4, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria
|
Not on your lists |
25447..26820
|
Uncharacterized protein n=1 Tax=Microcystis sp. T1-4 RepID=I4ICR2_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:CCI32086.1}; TaxID=1160279 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis sp. T1-4.;"
putative methylase
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_24
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26839..27375)
|
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035E39E6
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:KJR63440.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
cyclic nucleotide-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_25
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27400..30291)
|
ATP-binding cassette subfamily B n=1 Tax=Oceanibaculum indicum P24 RepID=K2JU92_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJR63441.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
ABC transporter-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_26
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30281..32473)
|
ABC transporter related n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GCL5_9BRAD
ABC transporter {ECO:0000313|EMBL:KJC58937.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_27
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32517..33770)
|
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003607D91
Uncharacterized protein {ECO:0000313|EMBL:KJR63442.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
membrane-fusion protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33912..36152)
|
DNA topoisomerase IV subunit alpha (EC:5.99.1.3)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
DNA topoisomerase 4 subunit A n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAE2_STAND
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_29
unknown
|
Not on your lists |
comp(36290..36646)
|
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJH0_METS4
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_54892_30
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(36711..37436)
|
DNA repair protein RecO n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LUK5_METRJ
DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
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