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2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

In projects: 2019_SCN_bioreactor_200211_biofilm  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_200211_biofilm_UNK

Properties

Avg. coverage: 15.46 Longest contig: 373.91 Kbp Bin length: 7.56 Mbp GC content: 69.51 %
Contigs count: 104 Features count: 7229 rRNAs count: 0 tRNAs count: 43

Genome completeness

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_biofilm_scaffold_37757
Order: Rhizobiales (60%)
10 10098 bp 71.63 13.61 91.00
berkeley_reactor_200306_biofilm_scaffold_46954
Order: Rhizobiales (54.55%)
22 24988 bp 66.96 13.81 89.35
berkeley_reactor_200306_biofilm_scaffold_106013
Order: Rhizobiales (50%)
8 7394 bp 69.42 14.22 87.96
berkeley_reactor_200306_biofilm_scaffold_5168
Order: Rhizobiales (77.78%)
9 12927 bp 67.12 14.26 75.79
berkeley_reactor_200306_biofilm_scaffold_125732
Order: Rhizobiales (76.92%)
13 13179 bp 70.52 14.33 89.51
berkeley_reactor_200306_biofilm_scaffold_160498
Order: Rhizobiales (66.67%)
3 5598 bp 67.95 14.50 82.32
berkeley_reactor_200306_biofilm_scaffold_150155
Order: Rhizobiales (90.91%)
22 24102 bp 72.09 14.51 89.62
berkeley_reactor_200306_biofilm_scaffold_2007
Order: Rhizobiales (65%)
20 22224 bp 70.32 14.52 92.01
berkeley_reactor_200306_biofilm_scaffold_135355
Order: Rhizobiales (72.41%)
29 30145 bp 69.64 14.60 88.46
berkeley_reactor_200306_biofilm_scaffold_38380
Species: Mesorhizobium ciceri (100%)
1 1537 bp 68.18 14.64 89.20
berkeley_reactor_200306_biofilm_scaffold_7733
Order: Rhizobiales (57.63%)
59 73603 bp 71.09 14.67 91.43
berkeley_reactor_200306_biofilm_scaffold_42397
Order: Rhizobiales (60%)
50 44660 bp 69.68 14.71 87.29
berkeley_reactor_200306_biofilm_scaffold_23687
Order: Rhizobiales (62.5%)
24 22226 bp 70.79 14.71 88.15
berkeley_reactor_200306_biofilm_scaffold_12839
Order: Rhizobiales (77.33%)
75 72513 bp 70.66 14.76 89.95
berkeley_reactor_200306_biofilm_scaffold_65599
Order: Rhizobiales (82.14%)
28 26151 bp 69.89 14.77 88.52
berkeley_reactor_200306_biofilm_scaffold_23616
Order: Rhizobiales (67.27%)
110 116015 bp 70.81 14.80 91.42
berkeley_reactor_200306_biofilm_scaffold_88389
Order: Rhizobiales (86.67%)
15 15450 bp 71.03 14.83 92.78
berkeley_reactor_200306_biofilm_scaffold_154241
Order: Rhizobiales (67.86%)
56 57861 bp 70.35 14.85 89.32
berkeley_reactor_200306_biofilm_scaffold_2495
Order: Rhizobiales (75%)
4 3790 bp 67.97 14.88 81.61
berkeley_reactor_200306_biofilm_scaffold_56669
Order: Rhizobiales (63.64%)
44 46748 bp 69.63 14.91 89.46
berkeley_reactor_200306_biofilm_scaffold_126567
Order: Rhizobiales (51.28%)
39 39369 bp 70.55 14.95 87.83
berkeley_reactor_200306_biofilm_scaffold_131489
Order: Rhizobiales (81.82%)
11 13548 bp 67.94 14.97 90.17
berkeley_reactor_200306_biofilm_scaffold_4461
Order: Rhizobiales (76.92%)
13 14424 bp 68.05 14.98 85.65
berkeley_reactor_200306_biofilm_scaffold_118653
Order: Rhizobiales (57.81%)
64 67911 bp 70.30 14.99 90.05
berkeley_reactor_200306_biofilm_scaffold_111575
Order: Rhizobiales (68.59%)
156 160912 bp 69.06 14.99 88.41
berkeley_reactor_200306_biofilm_scaffold_106678
Order: Rhizobiales (53.66%)
41 37962 bp 70.41 15.04 89.26
berkeley_reactor_200306_biofilm_scaffold_67262
Order: Rhizobiales (83.33%)
6 10691 bp 71.17 15.04 91.14
berkeley_reactor_200306_biofilm_scaffold_115287
Order: Rhizobiales (62.96%)
81 84242 bp 70.87 15.05 88.75
berkeley_reactor_200306_biofilm_scaffold_20018
Order: Rhizobiales (54.73%)
148 145153 bp 69.33 15.08 88.05
berkeley_reactor_200306_biofilm_scaffold_150415
Order: Rhizobiales (61.54%)
26 22214 bp 68.89 15.09 85.21
berkeley_reactor_200306_biofilm_scaffold_107365
Order: Rhizobiales (50%)
6 5750 bp 70.21 15.13 90.68
berkeley_reactor_200306_biofilm_scaffold_95231
Order: Rhizobiales (62.73%)
373 373914 bp 69.43 15.14 91.33
berkeley_reactor_200306_biofilm_scaffold_118572
Species: Bradyrhizobium elkanii (50%)
2 1466 bp 67.39 15.14 83.29
berkeley_reactor_200306_biofilm_scaffold_113505
Order: Rhizobiales (76.19%)
21 22638 bp 69.21 15.16 88.71
berkeley_reactor_200306_biofilm_scaffold_132831
Order: Rhizobiales (73.81%)
42 40798 bp 70.94 15.18 91.60
berkeley_reactor_200306_biofilm_scaffold_127933
Order: Rhizobiales (67.8%)
59 62756 bp 70.18 15.19 92.11
berkeley_reactor_200306_biofilm_scaffold_34479
Order: Rhizobiales (61.97%)
142 160630 bp 69.63 15.19 89.59
berkeley_reactor_200306_biofilm_scaffold_21758
Order: Rhizobiales (75%)
20 24378 bp 71.38 15.20 90.70
berkeley_reactor_200306_biofilm_scaffold_44015
Order: Rhizobiales (65.04%)
123 115513 bp 68.89 15.20 89.59
berkeley_reactor_200306_biofilm_scaffold_123522
Order: Rhizobiales (85.71%)
7 8197 bp 69.57 15.21 95.89
berkeley_reactor_200306_biofilm_scaffold_116766
Order: Rhizobiales (63.79%)
116 128301 bp 69.19 15.25 91.91
berkeley_reactor_200306_biofilm_scaffold_12255
Order: Rhizobiales (63.1%)
187 195104 bp 69.63 15.25 89.42
berkeley_reactor_200306_biofilm_scaffold_11784
Order: Rhizobiales (64.29%)
14 12601 bp 71.89 15.27 88.14
berkeley_reactor_200306_biofilm_scaffold_103592
Order: Rhizobiales (64.94%)
154 152324 bp 69.81 15.27 90.49
berkeley_reactor_200306_biofilm_scaffold_157852
Order: Rhizobiales (58.18%)
55 54805 bp 70.06 15.27 90.45
berkeley_reactor_200306_biofilm_scaffold_140837
Order: Rhizobiales (80.33%)
61 62841 bp 70.97 15.27 93.55
berkeley_reactor_200306_biofilm_scaffold_130994
Genus: Mesorhizobium (83.33%)
12 10818 bp 68.15 15.28 92.07
berkeley_reactor_200306_biofilm_scaffold_106759
Order: Rhizobiales (67.92%)
53 57416 bp 69.79 15.29 92.86
berkeley_reactor_200306_biofilm_scaffold_4811
Order: Rhizobiales (52.94%)
17 17309 bp 72.25 15.30 87.51
berkeley_reactor_200306_biofilm_scaffold_15188
Order: Rhizobiales (50%)
10 15511 bp 69.75 15.31 86.74
Displaying items 1-50 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.