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berkeley_reactor_200306_biofilm_scaffold_130994

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_130994_1
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..294
-----------------
DNA (294bp)
protein (98aa)
RNA polymerase sigma factor RpoH n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QVS5_METSZ
RNA polymerase sigma factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
berkeley_reactor_200306_biofilm_scaffold_130994_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(371..1171)
-----------------
DNA (801bp)
protein (267aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98JY0_RHILO
3-methyl-2-oxobutanoate hydroxymethyltransferase
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000313|EMBL:BAB49035.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
berkeley_reactor_200306_biofilm_scaffold_130994_3
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1185..1499)
-----------------
DNA (315bp)
protein (105aa)
Rieske (2Fe-2S) domain protein, MocE subfamily n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KCQ6_MESAW
Rieske (2Fe-2S) domain protein, MocE subfamily
Rieske (2Fe-2S) domain protein, MocE subfamily {ECO:0000313|EMBL:AGB43102.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
berkeley_reactor_200306_biofilm_scaffold_130994_4
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1536..2627)
-----------------
DNA (1092bp)
protein (364aa)
Fatty acid desaturase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F7P9_9RHIZ
Fatty acid desaturase {ECO:0000313|EMBL:CCV07921.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
fatty acid desaturase
berkeley_reactor_200306_biofilm_scaffold_130994_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2677..3858)
-----------------
DNA (1182bp)
protein (394aa)
UPI0003D05281 related cluster n=1 Tax=unknown RepID=UPI0003D05281
Uncharacterized protein {ECO:0000313|EMBL:ESZ21017.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_130994_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3868..4650)
-----------------
DNA (783bp)
protein (261aa)
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TDX4_MESCW
ABC transporter related protein {ECO:0000313|EMBL:CDX29950.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_130994_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4653..5657)
-----------------
DNA (1005bp)
protein (335aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CCV07924.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV07924.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ESN4_9RHIZ
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_130994_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5722..6663)
-----------------
DNA (942bp)
protein (314aa)
ABC transporter binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FCK3_9RHIZ
ABC transporter binding protein {ECO:0000313|EMBL:CCV14932.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_130994_9
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6892..7806)
-----------------
DNA (915bp)
protein (305aa)
UPI0003CEBDA4 related cluster n=1 Tax=unknown RepID=UPI0003CEBDA4
Xylose isomerase {ECO:0000313|EMBL:ESY63704.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
xylose isomerase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_130994_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7840..8928)
-----------------
DNA (1089bp)
protein (363aa)
UPI0003CFD1B7 related cluster n=1 Tax=unknown RepID=UPI0003CFD1B7
Oxidoreductase domain protein {ECO:0000313|EMBL:CDX59743.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_130994_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9257..10288
-----------------
DNA (1032bp)
protein (344aa)
Transcriptional regulator, LacI family n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FF46_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:ESX67799.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
LacI family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_130994_12
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10308..10817)
-----------------
DNA (510bp)
protein (170aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036867D3
Uncharacterized protein {ECO:0000313|EMBL:EJN15228.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
Displaying 12 items

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