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berkeley_reactor_200306_biofilm_scaffold_21758

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_21758_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..751)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036867D3
Uncharacterized protein {ECO:0000313|EMBL:KFC74024.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_2
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(886..2175)
DNA (1290bp) protein (430aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
adenylosuccinate synthetase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E869C7
adenylosuccinate synthetase
berkeley_reactor_200306_biofilm_scaffold_21758_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2333..3142)
DNA (810bp) protein (270aa)
creatininase n=1 Tax=Xanthobacteraceae RepID=UPI0003804896
creatininase
Creatininase {ECO:0000313|EMBL:ADH90124.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_21758_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3217..4521)
DNA (1305bp) protein (435aa)
Major facilitator family transporter n=2 Tax=Pseudomonas RepID=F0E7J8_PSEDT
MFS transporter {ECO:0000313|EMBL:KGM34504.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
major facilitator superfamily transporter
berkeley_reactor_200306_biofilm_scaffold_21758_5
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4693..5457
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030D4D78
Putative permease {ECO:0000313|EMBL:KFB08822.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_6
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5489..6979)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J6V1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11820.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_7
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7349..8341
DNA (993bp) protein (331aa)
glucosyl transferase (EC:2.4.1.-)
bactoprenol glucosyl transferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000382E6D6
Glycosyltransferase {ECO:0000313|EMBL:KGT73629.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
berkeley_reactor_200306_biofilm_scaffold_21758_8
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8353..9915
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QX05_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL80002.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
berkeley_reactor_200306_biofilm_scaffold_21758_9
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9917..11491
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378E05B
conserved membrane hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86199.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
berkeley_reactor_200306_biofilm_scaffold_21758_10
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11533..13089
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000378E05B
Uncharacterized protein {ECO:0000313|EMBL:EJZ31893.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13161..14789
DNA (1629bp) protein (543aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVB9_9RHIZ
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIM27911.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
AMP-dependent synthetase and ligase
berkeley_reactor_200306_biofilm_scaffold_21758_12
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14814..16112)
DNA (1299bp) protein (433aa)
Putative FHA domain containing protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7H9_ANADF
FHA domain-containing protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
berkeley_reactor_200306_biofilm_scaffold_21758_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16297..16476)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RY25_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig159, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52366.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16799..16981
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000368E6EA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50884.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
berkeley_reactor_200306_biofilm_scaffold_21758_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17210..18544
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI00036C30C8
peptidylprolyl isomerase
Peptidylprolyl isomerase {ECO:0000313|EMBL:AGW94754.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
berkeley_reactor_200306_biofilm_scaffold_21758_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18578..19285)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D9AFB6
Uncharacterized protein {ECO:0000313|EMBL:EIM27359.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_21758_17
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19490..21118)
DNA (1629bp) protein (543aa)
UPI0003CF9C83 related cluster n=1 Tax=unknown RepID=UPI0003CF9C83
Aminopeptidase {ECO:0000313|EMBL:ESY64635.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
L-aminopeptidase/D-esterase
berkeley_reactor_200306_biofilm_scaffold_21758_18
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21115..22584)
DNA (1470bp) protein (490aa)
Xylulokinase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBW2_BEII9
xylulokinase
Xylulokinase {ECO:0000313|EMBL:ACB93834.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_21758_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22683..23696)
DNA (1014bp) protein (338aa)
PfkB domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FWC5_ACICJ
ribokinase-like domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ABQ29907.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
berkeley_reactor_200306_biofilm_scaffold_21758_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23814..24377)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1M7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81574.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 20 items

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