ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_88389

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_88389_1
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..999
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002ED3D89
HrpA protein {ECO:0000313|EMBL:BAQ46910.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ATP-dependent helicase HrpB
berkeley_reactor_200306_biofilm_scaffold_88389_2
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1167..1454
DNA (288bp) protein (96aa)
Ribosomal protein L34 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN17_NITWN
Ribosomal protein L34 {ECO:0000256|RuleBase:RU000566}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
50S ribosomal protein L34
berkeley_reactor_200306_biofilm_scaffold_88389_3
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1483..1860
DNA (378bp) protein (126aa)
rnpA; ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
Ribonuclease P protein component n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YLD1_BRASO
berkeley_reactor_200306_biofilm_scaffold_88389_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1857..3695
DNA (1839bp) protein (613aa)
Membrane protein insertase YidC n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILM2_AZOC5
inner membrane protein translocase component YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_88389_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3703..4353
DNA (651bp) protein (217aa)
Probable GTP-binding protein EngB n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUQ1_9RHIZ
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
engB; ribosome biogenesis GTP-binding protein YsxC
berkeley_reactor_200306_biofilm_scaffold_88389_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4350..4718
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=C5AQN8_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS40135.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
berkeley_reactor_200306_biofilm_scaffold_88389_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4724..5011
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2I9S6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL52785.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_88389_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5166..6875
DNA (1710bp) protein (570aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UNK7_METS4
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACA16115.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_88389_9
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7005..8006
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. MED193 RepID=A3XDP9_9RHOB
PKD repeat protein {ECO:0000313|EMBL:KHQ55156.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_88389_10
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8183..9286
DNA (1104bp) protein (368aa)
Putative extracellular nuclease n=1 Tax=Moorea producens 3L RepID=F4XJY8_9CYAN
Putative extracellular nuclease {ECO:0000313|EMBL:EGJ34947.1}; TaxID=489825 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
endonuclease/exonuclease/phosphatase
berkeley_reactor_200306_biofilm_scaffold_88389_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9432..11801)
DNA (2370bp) protein (790aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C2864
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:EPE98186.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
OmpA/MotB domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_88389_12
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..12748
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EFB2F1
hypothetical protein
Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_88389_13
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12785..14413
DNA (1629bp) protein (543aa)
transcription elongation factor NusA n=1 Tax=Methyloferula stellata RepID=UPI00037F71DE
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_88389_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14420..15193
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003811911
Uncharacterized protein {ECO:0000313|EMBL:KFC65466.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_88389_15
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15190..15450
DNA (261bp) protein (87aa)
translation initiation factor IF-2 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036E9E0D
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Displaying 15 items

View Taxonomy