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berkeley_reactor_200306_biofilm_scaffold_132831

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_132831_1
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..395
DNA (393bp) protein (131aa)
Smr protein/MutS2 n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PJF2_PSEUV
Smr protein/MutS2
Smr protein/MutS2 {ECO:0000313|EMBL:EEA93978.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
berkeley_reactor_200306_biofilm_scaffold_132831_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

392..754
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D90990
XRE family transcriptional regulator {ECO:0000313|EMBL:KFL26151.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
XRE family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_132831_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

915..3569
DNA (2655bp) protein (885aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003694722
Uncharacterized protein {ECO:0000313|EMBL:EIM27844.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_132831_4
bacterium YEK0313, Bacteria

Not on your lists

3712..5031
DNA (1320bp) protein (440aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037EC034
histidine kinase
berkeley_reactor_200306_biofilm_scaffold_132831_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5272..6309
DNA (1038bp) protein (346aa)
Phosphate-binding protein PstS n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILI3_AZOC5
phosphate binding protein
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_132831_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6369..7370
DNA (1002bp) protein (334aa)
Phosphate ABC transporter, inner membrane subunit PstC n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0I9_STAND
phosphate ABC transporter permease
Phosphate ABC transporter, inner membrane subunit PstC {ECO:0000313|EMBL:ADH91310.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_132831_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7379..8212
DNA (834bp) protein (278aa)
Phosphate ABC transporter, inner membrane subunit PstA n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0J0_STAND
phosphate ABC transporter permease
Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:ADH91311.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_132831_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8221..9042
DNA (822bp) protein (274aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
phosphate ABC transporter ATP-binding protein n=1 Tax=Xanthobacteraceae RepID=UPI00037DF91B
phosphate ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_132831_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9069..9791
DNA (723bp) protein (241aa)
PhoU family transcriptional regulator n=1 Tax=Xanthobacteraceae RepID=UPI000366E529
phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_132831_10
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9805..10503
DNA (699bp) protein (233aa)
Phosphate regulon transcriptional regulatory protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILH0_AZOC5
phoB; phosphate regulon transcriptional regulatory protein
Phosphate regulon transcriptional regulatory protein {ECO:0000313|EMBL:BAF90030.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_132831_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10550..10960)
DNA (411bp) protein (137aa)
Putative transcriptional regulator with C-terminal CBS domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BRD8_9RHIZ
Putative transcriptional regulator with C-terminal CBS domain-containing protein {ECO:0000313|EMBL:EJL56611.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
helix-turn-helix domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_132831_12
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11311..12108)
DNA (798bp) protein (266aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKZ4_9RHIZ
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:EIM24636.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
membrane-bound lytic murein transglycosylase protein
berkeley_reactor_200306_biofilm_scaffold_132831_13
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12310..12876
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035C5F7C
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:KJB94824.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
pyridoxamine 5'-phosphate oxidase
berkeley_reactor_200306_biofilm_scaffold_132831_14
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13021..13491
DNA (471bp) protein (157aa)
transcriptional regulator n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037EB8FA
DNA binding family proteinMerR
MerR, DNA binding family {ECO:0000313|EMBL:ADZ71662.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_132831_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13508..15286
DNA (1779bp) protein (593aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQJ7_METS4
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACA17683.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_132831_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15318..15719
DNA (402bp) protein (134aa)
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45248.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
berkeley_reactor_200306_biofilm_scaffold_132831_17
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15818..17026
DNA (1209bp) protein (403aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ACB81591.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ACB81591.1};; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Acetyl-CoA acetyltransferase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZKM1_METPB
acetyl-CoA acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_132831_18
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17144..19357
DNA (2214bp) protein (738aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (EC:1.1.1.35 4.2.1.17)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:AIQ87760.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AIQ87760.1};; EC=4.2.1.17 {ECO:0000313|EMBL:AIQ87760.1};; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QN00_METTR
berkeley_reactor_200306_biofilm_scaffold_132831_19
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19452..21386
DNA (1935bp) protein (645aa)
histidine kinase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003726025
Putative two-component hybrid sensor and regulator {ECO:0000313|EMBL:GAO40978.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
histidine kinase
berkeley_reactor_200306_biofilm_scaffold_132831_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21475..22161
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIB1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGM34957.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
DNA glycosylase
berkeley_reactor_200306_biofilm_scaffold_132831_21
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22186..22590)
DNA (405bp) protein (135aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Ribonuclease VapC n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTS4_RHIE6
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_132831_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22587..22850)
DNA (264bp) protein (88aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PTS5_RHIE6
AbrB/SpoV domain-containing protein
AbrB/SpoV domain-containing protein {ECO:0000313|EMBL:AIC28166.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
berkeley_reactor_200306_biofilm_scaffold_132831_23
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23129..23851
DNA (723bp) protein (241aa)
UPI0003CF5F76 related cluster n=1 Tax=unknown RepID=UPI0003CF5F76
Short-chain dehydrogenase {ECO:0000313|EMBL:ESW91987.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_biofilm_scaffold_132831_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23802..24782)
DNA (981bp) protein (327aa)
UPI0003CF04B9 related cluster n=1 Tax=unknown RepID=UPI0003CF04B9
transcriptional regulator
Transcriptional regulator protein {ECO:0000313|EMBL:ACM28354.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
berkeley_reactor_200306_biofilm_scaffold_132831_25
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24819..25133)
DNA (315bp) protein (105aa)
Plasmid stabilization system n=2 Tax=Pseudomonas RepID=K6CX18_PSEST
Plasmid stabilization protein {ECO:0000313|EMBL:EXL08875.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
plasmid stabilization system
berkeley_reactor_200306_biofilm_scaffold_132831_26
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25138..25392)
DNA (255bp) protein (85aa)
addiction module antitoxin n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F427
Addiction module antitoxin {ECO:0000313|EMBL:KGJ09589.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_132831_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25505..26188)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037EF53B
carbamoylphosphate synthase large subunit
Carbamoyl-phosphate synthase large chain {ECO:0000313|EMBL:ADZ68627.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_132831_28
bacterium YEK0313, Bacteria

Not on your lists

26420..26785
DNA (366bp) protein (122aa)
DGPFAETKE family protein n=1 Tax=Burkholderia sp. H160 RepID=B5WK66_9BURK
YCII-related domain protein {ECO:0000313|EMBL:CEJ15157.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_132831_29
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26775..28028
DNA (1254bp) protein (418aa)
UPI0003CE3FBF related cluster n=1 Tax=unknown RepID=UPI0003CE3FBF
RNA polymerase sigma70 factor {ECO:0000313|EMBL:ESZ13855.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
putative RNA polymerase sigma factor containing a TPR repeat domain
berkeley_reactor_200306_biofilm_scaffold_132831_30
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28029..29039)
DNA (1011bp) protein (337aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.5.2)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037C4D5B
Displaying items 1-30 of 42 in total

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