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berkeley_reactor_200306_biofilm_scaffold_63135

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Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_63135_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199..933)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LSG9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20664.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_63135_2
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1094..2470)
DNA (1377bp) protein (459aa)
multidrug transporter MatE n=1 Tax=Xanthobacteraceae RepID=UPI00037B6E3C
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADH91282.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_63135_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2530..4374)
DNA (1845bp) protein (615aa)
Potassium:proton antiporter n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ATF3_METEA
KefB protein {ECO:0000313|EMBL:BAQ48417.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
kefB; potassium:proton antiporter
berkeley_reactor_200306_biofilm_scaffold_63135_4
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4546..6189
DNA (1644bp) protein (548aa)
Acyl-CoA dehydrogenase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BL38_9GAMM
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EAR23026.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
putative acyl-CoA dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_63135_5
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6200..6418)
DNA (219bp) protein (73aa)
CcdB-like toxin protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXE3_9PROT
CcdB-like toxin protein {ECO:0000313|EMBL:CAM75300.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_63135_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6514..6744)
DNA (231bp) protein (77aa)
Post-segregation antitoxin CcdA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPK7_PARL1
post-segregation antitoxin CcdA
Post-segregation antitoxin CcdA {ECO:0000313|EMBL:ABS61840.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
berkeley_reactor_200306_biofilm_scaffold_63135_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6810..7508)
DNA (699bp) protein (233aa)
Invasion associated locus B family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A496_STAND
invasion associated locus B family protein
Invasion associated locus B family protein {ECO:0000313|EMBL:ADH87916.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_63135_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7687..8529
DNA (843bp) protein (281aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
cytochrome B561 n=1 Tax=Xanthobacteraceae RepID=UPI00037E71D9
cytochrome C oxidase subunit II
berkeley_reactor_200306_biofilm_scaffold_63135_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8550..10175
DNA (1626bp) protein (542aa)
Cytochrome c oxidase, subunit I n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPZ7_9RHIZ
Cytochrome c oxidase, subunit I {ECO:0000313|EMBL:EIM26039.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
coxA; cytochrome C oxidase polypeptide I transmembrane protein
berkeley_reactor_200306_biofilm_scaffold_63135_10
bacterium YEK0313, Bacteria

Not on your lists

10318..11256
DNA (939bp) protein (313aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Protoheme IX farnesyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A499_STAND
protoheme IX farnesyltransferase
berkeley_reactor_200306_biofilm_scaffold_63135_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11258..11419
DNA (162bp) protein (54aa)
Putative CoxF n=1 Tax=Rhodovulum sp. PH10 RepID=J5PL63_9RHOB
Putative CoxF {ECO:0000313|EMBL:EJW11467.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CoxF protein
berkeley_reactor_200306_biofilm_scaffold_63135_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11424..12020
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000372293C
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
cytochrome C oxidase assembly protein CtaG/Cox11
berkeley_reactor_200306_biofilm_scaffold_63135_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12054..12884
DNA (831bp) protein (277aa)
coxC; cytochrome c oxidase, subunit 3 (EC:1.9.3.1)
Cytochrome c oxidase subunit III n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6Z7_9BRAD
Cytochrome B562 {ECO:0000313|EMBL:ETR77199.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
berkeley_reactor_200306_biofilm_scaffold_63135_14
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12999..13370
DNA (372bp) protein (124aa)
Uncharacterized protein n=3 Tax=Ochrobactrum intermedium RepID=M5K469_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ95177.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_63135_15
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13367..14110
DNA (744bp) protein (248aa)
Surfeit locus 1 family protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4A4_STAND
surfeit locus 1 family protein
Surfeit locus 1 family protein {ECO:0000313|EMBL:ADH87924.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_63135_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14136..14549)
DNA (414bp) protein (138aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Ribonuclease VapC n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PRC0_RHIE6
plasmid stabilization protein
berkeley_reactor_200306_biofilm_scaffold_63135_17
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14620..14973)
DNA (354bp) protein (118aa)
UPI0003D06CE3 related cluster n=1 Tax=unknown RepID=UPI0003D06CE3
hypothetical protein
Prevent-host-death protein {ECO:0000313|EMBL:ESZ13027.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
berkeley_reactor_200306_biofilm_scaffold_63135_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15249..16364
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UH19_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13226.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_63135_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16361..17293
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IWC0_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07490.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
berkeley_reactor_200306_biofilm_scaffold_63135_20
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17301..17930)
DNA (630bp) protein (210aa)
UPI0003D00C69 related cluster n=1 Tax=unknown RepID=UPI0003D00C69
Glutathione S-transferase {ECO:0000313|EMBL:ESZ21871.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
gstA; protein GstA
berkeley_reactor_200306_biofilm_scaffold_63135_21
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18006..18602)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000367F9DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF87140.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_63135_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18731..20143
DNA (1413bp) protein (471aa)
Threonine synthase {ECO:0000313|EMBL:KFC75275.1}; EC=4.2.3.1 {ECO:0000313|EMBL:KFC75275.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037E1853
threonine synthase
berkeley_reactor_200306_biofilm_scaffold_63135_23
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20140..21399
DNA (1260bp) protein (420aa)
Peptidase M16 domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IGI9_BEII9
peptidase M16 domain-containing protein
Peptidase M16 domain protein {ECO:0000313|EMBL:ACB94371.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_63135_24
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21406..21993
DNA (588bp) protein (196aa)
GCN5-related N-acetyltransferase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4A7_STAND
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADH87927.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_63135_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22059..23519
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037DDED6
Uncharacterized protein {ECO:0000313|EMBL:KFC74098.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_63135_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23635..24831
DNA (1197bp) protein (399aa)
Putative alpha-beta hydrolase superfamily patatin-like phospholipase domain n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TRF2_9BRAD
Putative alpha-beta hydrolase superfamily patatin-like phospholipase domain {ECO:0000313|EMBL:CCE09040.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
alpha/beta superfamily hydrolase
berkeley_reactor_200306_biofilm_scaffold_63135_27
bacterium YEK0313, Bacteria

Not on your lists

comp(24883..25758)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037B97CD
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CEJ15121.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
UTP-glucose-1-phosphate uridylyltransferase
berkeley_reactor_200306_biofilm_scaffold_63135_28
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26011..28896
DNA (2886bp) protein (962aa)
diguanylate cyclase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003150205
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGP09224.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
diguanylate cyclase/phosphodiesterase
berkeley_reactor_200306_biofilm_scaffold_63135_29
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29071..31155
DNA (2085bp) protein (695aa)
Sensory box/GGDEF family protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNR2_AGRRK
sensory box/GGDEF family protein
Diguanylate cyclase {ECO:0000313|EMBL:KEA03300.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
berkeley_reactor_200306_biofilm_scaffold_63135_30
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31168..31707)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EM81_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ37275.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying items 1-30 of 75 in total

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