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berkeley_reactor_200306_biofilm_scaffold_116353

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Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_116353_trna_1
unknown

Not on your lists

283..356
DNA (74bp)
transferRNA Met
berkeley_reactor_200306_biofilm_scaffold_116353_1
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(489..1298)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EJY2_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:GAN77419.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_116353_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2082..2648)
DNA (567bp) protein (189aa)
Putative phospholipid N-methyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUB7_9RHIZ
Putative phospholipid N-methyltransferase {ECO:0000313|EMBL:ENN84381.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
rsmA; phospholipid N-methyltransferase protein
berkeley_reactor_200306_biofilm_scaffold_116353_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2791..3465
DNA (675bp) protein (225aa)
Putative transcriptional regulatory protein y4xI n=1 Tax=Rhizobium freirei PRF 81 RepID=N6URP1_9RHIZ
Putative transcriptional regulatory protein y4xI {ECO:0000313|EMBL:ENN84380.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
two-component response regulator
berkeley_reactor_200306_biofilm_scaffold_116353_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3462..4832
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Putative two-component sensor kinase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TV92_9RHIZ
periplasmic sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_116353_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5196..5468
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036E14F6
Transcription factor {ECO:0000313|EMBL:KGE00223.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_116353_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5465..5878
DNA (414bp) protein (138aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
ribonuclease n=1 Tax=Rhizobium meliloti RepID=UPI00036796CE
PilT domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_116353_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6002..6778)
DNA (777bp) protein (259aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hydroxypyruvate isomerase (EC:5.3.1.22)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003766116
berkeley_reactor_200306_biofilm_scaffold_116353_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6793..7836)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360FB41
Uncharacterized protein {ECO:0000313|EMBL:KKB08960.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
alcohol dehydrogenase zinc-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_116353_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7841..8668)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A2BE2
Uncharacterized protein {ECO:0000313|EMBL:KKB08961.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_116353_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8668..9591)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D79AB
Uncharacterized protein {ECO:0000313|EMBL:KKB08962.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
binding-protein-dependent transport system inner membrane protein
berkeley_reactor_200306_biofilm_scaffold_116353_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9610..10890)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037E4E58
Uncharacterized protein {ECO:0000313|EMBL:KKB08963.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
sugar ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_116353_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11081..12127)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BABAC
Uncharacterized protein {ECO:0000313|EMBL:KKB10211.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
DNA-binding transcriptional regulator CytR
berkeley_reactor_200306_biofilm_scaffold_116353_13
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12312..12977)
DNA (666bp) protein (222aa)
acetyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DCEEC5
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AJY45444.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
berkeley_reactor_200306_biofilm_scaffold_116353_14
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..14156
DNA (714bp) protein (238aa)
Phosphonate metabolism transcriptional regulator PhnF n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A855_9PROT
Phosphonate metabolism transcriptional regulator PhnF {ECO:0000313|EMBL:EHL96022.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
putative transcriptional regulator, GntR family, with an UbiC transcription regulator-associated domain
berkeley_reactor_200306_biofilm_scaffold_116353_15
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14162..14995)
DNA (834bp) protein (278aa)
ABC transporter permease n=1 Tax=Aureimonas ureilytica RepID=UPI000363D573
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
berkeley_reactor_200306_biofilm_scaffold_116353_16
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14992..15927)
DNA (936bp) protein (312aa)
ABC transporter, membrane spanning protein (Sugar) n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CET2_AGRT5
sugar ABC transporter permease
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
berkeley_reactor_200306_biofilm_scaffold_116353_17
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15929..17212)
DNA (1284bp) protein (428aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQF5_9RHIZ
sugar ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
berkeley_reactor_200306_biofilm_scaffold_116353_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17267..18442)
DNA (1176bp) protein (392aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI0003059E09
lacK; Lactose ABC transporter, ATP-binding protein LacK
Lactose ABC transporter, ATP-binding protein LacK {ECO:0000313|EMBL:CDN52319.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
berkeley_reactor_200306_biofilm_scaffold_116353_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18648..19553)
DNA (906bp) protein (302aa)
PHP C-terminal domain protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QUI3_9RHIZ
PHP C-terminal domain protein {ECO:0000313|EMBL:ESR23387.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
PHP domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_116353_20
unknown

Not on your lists

19831..20004
DNA (174bp) protein (58aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_116353_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20077..21084
DNA (1008bp) protein (336aa)
Transcriptional regulator, AraC family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B9A7_RHILS
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACS60495.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_116353_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21350..23023
DNA (1674bp) protein (558aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C2BE6
extracellular solute-binding protein family 5
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACS60494.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_116353_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23145..24158
DNA (1014bp) protein (338aa)
Putative permease component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M4X5_RHIL3
ABC transporter permease
Putative permease component of ABC transporter {ECO:0000313|EMBL:CAK11844.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
berkeley_reactor_200306_biofilm_scaffold_116353_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24162..25037
DNA (876bp) protein (292aa)
Putative permease component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M4X6_RHIL3
ABC transporter permease
Putative permease component of ABC transporter {ECO:0000313|EMBL:CAK11843.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
berkeley_reactor_200306_biofilm_scaffold_116353_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25034..27130
DNA (2097bp) protein (699aa)
glutathione ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003760216
peptide ABC transporter ATPase
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ACS60491.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_116353_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27127..28389
DNA (1263bp) protein (421aa)
Putative MFS family transporter n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M4X8_RHIL3
MFS family transporter
Putative MFS family transporter {ECO:0000313|EMBL:CAK11841.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
berkeley_reactor_200306_biofilm_scaffold_116353_27
unknown

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28394..28498
DNA (105bp) protein (35aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_116353_28
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28495..29268
DNA (774bp) protein (258aa)
short chain dehydrogenase/reductase (EC:1.1.1.1)
Short chain dehydrogenase/reductase {ECO:0000313|EMBL:AGT10604.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AGT10604.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Short chain dehydrogenase/reductase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XT19_PARAH
berkeley_reactor_200306_biofilm_scaffold_116353_29
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29320..30363
DNA (1044bp) protein (348aa)
Putative NAD-dependent epimerase/dehydratase n=1 Tax=Rhizobium loti RepID=M5ANU5_RHILI
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:CDX44657.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
NAD-dependent epimerase/dehydratase
Displaying items 1-30 of 110 in total

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