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berkeley_reactor_200306_biofilm_scaffold_151446

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Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_151446_1
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..708)
DNA (708bp) protein (236aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX25657.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
berkeley_reactor_200306_biofilm_scaffold_151446_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(816..2954)
DNA (2139bp) protein (713aa)
Alpha-galactosidase n=1 Tax=Rhizobium sp. AP16 RepID=J2L179_9RHIZ
Alpha-galactosidase {ECO:0000313|EMBL:KEA08056.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
alpha-galactosidase
berkeley_reactor_200306_biofilm_scaffold_151446_3
bacterium YEK0313, Bacteria

Not on your lists

3140..4120
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003817E2C
NMT1/THI5 like protein {ECO:0000313|EMBL:CEJ14403.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TRAP transporter solute receptor TAXI family protein
berkeley_reactor_200306_biofilm_scaffold_151446_4
bacterium YEK0313, Bacteria

Not on your lists

4321..6681
DNA (2361bp) protein (787aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UYU4_ROSS1
DctM-like transporters {ECO:0000313|EMBL:CEJ14402.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TRAP transporter, 4TM/12TM fusion protein
berkeley_reactor_200306_biofilm_scaffold_151446_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6761..8587
DNA (1827bp) protein (609aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003664A27
glycoside hydrolase 15-related protein
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:AHG87856.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
berkeley_reactor_200306_biofilm_scaffold_151446_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8784..9200
DNA (417bp) protein (139aa)
Ketosteroid isomerase-like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSP5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYD76298.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_151446_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9225..9806)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NRC1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30040.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_151446_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9875..10504)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E3CD03
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:EIM27422.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
haloacid dehalogenase
berkeley_reactor_200306_biofilm_scaffold_151446_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10598..11662)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PP14_9CAUL
Putative alginate lyase {ECO:0000313|EMBL:GAK69938.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
algL; alginate lyase; Poly(beta-D-mannuronate) lyase
berkeley_reactor_200306_biofilm_scaffold_151446_10
bacterium YEK0313, Bacteria

Not on your lists

comp(11815..12417)
DNA (603bp) protein (201aa)
phasin n=1 Tax=Xanthobacteraceae RepID=UPI000374D368
Phasin protein {ECO:0000313|EMBL:CEJ11474.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phasin
berkeley_reactor_200306_biofilm_scaffold_151446_11
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12665..13225
DNA (561bp) protein (187aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZQ0_STAND
RNA polymerase sigma factor {ECO:0000313|EMBL:EZQ15335.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ECF subfamily RNA polymerase sigma-24 subunit
berkeley_reactor_200306_biofilm_scaffold_151446_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13209..13982
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031BA6BA
Transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:EZQ15336.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
transmembrane anti-sigma factor
berkeley_reactor_200306_biofilm_scaffold_151446_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14007..14732
DNA (726bp) protein (242aa)
membrane protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6DF37
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91243.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_151446_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14763..15350
DNA (588bp) protein (196aa)
Putative periplasmic ligand-binding sensor protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZP7_STAND
periplasmic ligand-binding sensor protein
Putative periplasmic ligand-binding sensor protein {ECO:0000313|EMBL:ADH91242.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_151446_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15530..17068
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XVI9_ALCXX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH08599.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
berkeley_reactor_200306_biofilm_scaffold_151446_16
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17290..18372
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D6568
6-O-methylguanine DNA methyltransferase {ECO:0000313|EMBL:KHJ54582.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
methylated-DNA--protein-cysteine methyltransferase
berkeley_reactor_200306_biofilm_scaffold_151446_17
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18369..19115
DNA (747bp) protein (249aa)
UPI0003CF8EE2 related cluster n=1 Tax=unknown RepID=UPI0003CF8EE2
Prolyl 4-hydroxylase {ECO:0000313|EMBL:ESY76923.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_151446_18
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19102..19638
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036124F5
Methylated-DNA--[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EKY27329.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
methylated-DNA/protein-cysteine methyltransferase
berkeley_reactor_200306_biofilm_scaffold_151446_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19840..20286)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DI17_BRAJP
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:KFC65755.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sugar-phosphate isomerase
berkeley_reactor_200306_biofilm_scaffold_151446_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20356..21150)
DNA (795bp) protein (265aa)
amino acid ABC transporter n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000362D35B
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:KFC65754.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular solute-binding protein
berkeley_reactor_200306_biofilm_scaffold_151446_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21176..21925)
DNA (750bp) protein (250aa)
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXT1_9RHIZ
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EIM28773.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_151446_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21927..22589)
DNA (663bp) protein (221aa)
amino acid ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366D9AB
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:KFC65752.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_151446_23
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22598..23281)
DNA (684bp) protein (228aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G9F3_9BRAD
ABC transporter permease {ECO:0000313|EMBL:KGT76613.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
polar amino acid ABC transporter inner membrane subunit
berkeley_reactor_200306_biofilm_scaffold_151446_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23296..24195)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DI12_BRAJP
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:KFC65750.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
6-phosphogluconate dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_151446_25
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24226..24981)
DNA (756bp) protein (252aa)
GntR domain-containing protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G9F1_9BRAD
GntR family transcriptional regulator
GntR domain-containing protein {ECO:0000313|EMBL:BAL77388.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
berkeley_reactor_200306_biofilm_scaffold_151446_26
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25176..25688
DNA (513bp) protein (171aa)
AraC family transcriptional regulator n=1 Tax=Sphingomonas wittichii RepID=UPI0002D58E3A
methylated-DNA--protein-cysteine methyltransferase
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:ABQ66919.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
berkeley_reactor_200306_biofilm_scaffold_151446_27
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25698..26210)
DNA (513bp) protein (171aa)
HyqI n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HVT3_AZOC5
NADH ubiquinone oxidoreductase
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
berkeley_reactor_200306_biofilm_scaffold_151446_28
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26219..27760)
DNA (1542bp) protein (514aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ACB96086.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACB96086.1};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
NADH dehydrogenase (Quinone) n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IID3_BEII9
berkeley_reactor_200306_biofilm_scaffold_151446_29
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27770..29221)
DNA (1452bp) protein (484aa)
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLY8_9SPHN
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit {ECO:0000313|EMBL:CCW17996.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hyfF; hydrogenase 4 subunit F
berkeley_reactor_200306_biofilm_scaffold_151446_30
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29218..29880)
DNA (663bp) protein (221aa)
hydrogenase-4 component E n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DD1CB6
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
Displaying items 1-30 of 99 in total

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